Pre_GI: BLASTN Hits

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Query: NC_016582:8243727 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8243727, End: 8268551, Length: 24825

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011886:40466140466142708122421Arthrobacter chlorophenolicus A6, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015514:24146172414617243874024124Cellulomonas fimi ATCC 484 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014151:23120002312000233474222743Cellulomonas flavigena DSM 20109 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015671:15408601540860156478123922Cellvibrio gilvus ATCC 13127 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010407:151599*15159917558923991Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1487.7BLASTN svgBLASTP svg
NC_015588:19657871965787198857522789Isoptericola variabilis 225 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015588:24682072468207249482226616Isoptericola variabilis 225 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009664:37189273718927374705528129Kineococcus radiotolerans SRS30216, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013169:1661135*1661135168009918965Kytococcus sedentarius DSM 20547, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_019673:27333272733327275459921273Saccharothrix espanaensis DSM 44229 complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013521:94049594049596409923605Sanguibacter keddieii DSM 10542, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013947:3080290*3080290311039130102Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3e-31145BLASTN svgBLASTP svg
NC_013947:65858476585847662674840902Stackebrandtia nassauensis DSM 44728 chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_003888:23059012305901232945223552Streptomyces coelicolor A3(2), complete genome2e-78301BLASTN svgBLASTP svg
NC_021177:19229301922930194704124112Streptomyces fulvissimus DSM 40593, complete genome4e-39170BLASTN svgBLASTP svg
NC_010572:62934176293417631646623050Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-60242BLASTN svgBLASTP svg
NC_015953:17564931756493177842421932Streptomyces sp. SirexAA-E chromosome, complete genome6e-29137BLASTN svgBLASTP svg
NC_015953:58657335865733590682141089Streptomyces sp. SirexAA-E chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_018750:20052292005229203059225364Streptomyces venezuelae ATCC 10712, complete genome2e-75291BLASTN svgBLASTP svg
NC_013510:5175649*5175649519917923531Thermomonospora curvata DSM 43183, complete genome1e-26129BLASTN svgBLASTP svg
NC_015434:4640769*4640769466756226794Verrucosispora maris AB-18-032 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg