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Query: NC_016582:6811273 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 6811273, End: 6834504, Length: 23232

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015957:85697218569721859285323133Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-96361BLASTN svgBLASTP svg
NC_015953:20590832059083208140822326Streptomyces sp. SirexAA-E chromosome, complete genome5e-91343BLASTN svgBLASTP svg
NC_021177:21858982185898220648120584Streptomyces fulvissimus DSM 40593, complete genome2e-87331BLASTN svgBLASTP svg
NC_008268:17486351748635177239623762Rhodococcus sp. RHA1, complete genome7e-44186BLASTN svgBLASTP svg
NC_018750:3661243*3661243368475823516Streptomyces venezuelae ATCC 10712, complete genome3e-37165BLASTN svgBLASTP svg
NC_021177:4258102*4258102427958121480Streptomyces fulvissimus DSM 40593, complete genome6e-29137BLASTN svgBLASTP svg
NC_015514:39116553911655393796226308Cellulomonas fimi ATCC 484 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
NC_003888:45235004523500454956026061Streptomyces coelicolor A3(2), complete genome8e-1693.7BLASTN svgBLASTP svg
NC_009664:43777774377777440126323487Kineococcus radiotolerans SRS30216, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013131:80296218029621805301123391Catenulispora acidiphila DSM 44928, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008699:1067855*1067855111667748823Nocardioides sp. JS614, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010572:45855004585500461328027781Streptomyces griseus subsp. griseus NBRC 13350, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013093:2633000*2633000269098057981Actinosynnema mirum DSM 43827, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015953:19838211983821200380019980Streptomyces sp. SirexAA-E chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014391:34456723445672346889423223Micromonospora aurantiaca ATCC 27029 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013093:31578973157897318209324197Actinosynnema mirum DSM 43827, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013521:2193203*2193203221998826786Sanguibacter keddieii DSM 10542, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013595:19649319649322011923627Streptosporangium roseum DSM 43021, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013757:37175003717500374103323534Geodermatophilus obscurus DSM 43160, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018750:62378756237875626148023606Streptomyces venezuelae ATCC 10712, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013757:21245212454675925515Geodermatophilus obscurus DSM 43160, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013947:65614065614068068124542Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013595:60609660609662549919404Streptosporangium roseum DSM 43021, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013131:7401253*7401253742304021788Catenulispora acidiphila DSM 44928, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003155:79790507979050800260423555Streptomyces avermitilis MA-4680, complete genome3e-0661.9BLASTN svgBLASTP svg