Pre_GI: BLASTN Hits

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Query: NC_016582:2009588 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 2009588, End: 2032631, Length: 23044

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015957:51099025109902512826818367Streptomyces violaceusniger Tu 4113 chromosome, complete genome0983BLASTN svgBLASTP svg
NC_010572:40986340986342959919737Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-172613BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-133482BLASTN svgBLASTP svg
NC_015957:75330007533000755153218533Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-119436BLASTN svgBLASTP svg
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-114420BLASTN svgBLASTP svg
NC_015957:72498737249873727238122509Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-112414BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-54220BLASTN svgBLASTP svg
NC_008687:22994122994125509925159Paracoccus denitrificans PD1222 chromosome 2, complete sequence5e-20107BLASTN svgBLASTP svg
NC_007348:2558500*2558500258100922510Ralstonia eutropha JMP134 chromosome 2, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_003903:16782516782520035432530Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_021177:14182131418213144186323651Streptomyces fulvissimus DSM 40593, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011958:1031592*1031592107050538914Rhodobacter sphaeroides KD131 chromosome 2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010572:18850018850021341824919Streptomyces griseus subsp. griseus NBRC 13350, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009921:565947*56594758537019424Frankia sp. EAN1pec, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009050:567209*56720959401626808Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_003155:5443230*5443230546350520276Streptomyces avermitilis MA-4680, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_021177:66626686662668668358820921Streptomyces fulvissimus DSM 40593, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010572:17486681748668176920720540Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-0661.9BLASTN svgBLASTP svg