Pre_GI: BLASTN Hits

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Query: NC_016582:11920331 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11920331, End: 11945499, Length: 25169

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome01148BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome01029BLASTN svgBLASTP svg
NC_015957:72498737249873727238122509Streptomyces violaceusniger Tu 4113 chromosome, complete genome0811BLASTN svgBLASTP svg
NC_015957:75330007533000755153218533Streptomyces violaceusniger Tu 4113 chromosome, complete genome0674BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-64254BLASTN svgBLASTP svg
NC_015957:68592596859259687895419696Streptomyces violaceusniger Tu 4113 chromosome, complete genome9e-59236BLASTN svgBLASTP svg
NC_009142:5698100*5698100573806239963Saccharopolyspora erythraea NRRL 2338, complete genome6e-26127BLASTN svgBLASTP svg
NC_009921:3551036*3551036362235971324Frankia sp. EAN1pec, complete genome1e-20109BLASTN svgBLASTP svg
NC_009921:52200052200056210240103Frankia sp. EAN1pec, complete genome2e-19105BLASTN svgBLASTP svg
NC_009921:4757148*4757148478108523938Frankia sp. EAN1pec, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013131:621366*62136664479723432Catenulispora acidiphila DSM 44928, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009921:565947*56594758537019424Frankia sp. EAN1pec, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009921:4035225*4035225407387638652Frankia sp. EAN1pec, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009921:85497578549757862261572859Frankia sp. EAN1pec, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_019673:3041936*3041936305959917664Saccharothrix espanaensis DSM 44229 complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009921:8147947*8147947818742439478Frankia sp. EAN1pec, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009921:55319725531972555201920048Frankia sp. EAN1pec, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009921:36668983666898374071873821Frankia sp. EAN1pec, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009921:53315655331565535374522181Frankia sp. EAN1pec, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015957:88163558816355883412317769Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome1e-0869.9BLASTN svgBLASTP svg
NC_019673:36079583607958365209944142Saccharothrix espanaensis DSM 44229 complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015957:49635004963500498135217853Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014815:6616500*6616500671195895459Micromonospora sp. L5 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009921:593665*59366561388920225Frankia sp. EAN1pec, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014391:26513152651315269455543241Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009921:55080005508000553009922100Frankia sp. EAN1pec, complete genome3e-0661.9BLASTN svgBLASTP svg