Pre_GI: BLASTN Hits

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Query: NC_016582:11878078 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11878078, End: 11908099, Length: 30022

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome0809BLASTN svgBLASTP svg
NC_015953:59084675908467592977521309Streptomyces sp. SirexAA-E chromosome, complete genome0753BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome0690BLASTN svgBLASTP svg
NC_015957:75330007533000755153218533Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-157563BLASTN svgBLASTP svg
NC_012669:14937741493774151546921696Beutenbergia cavernae DSM 12333, complete genome1e-116428BLASTN svgBLASTP svg
NC_018750:75404507540450756160921160Streptomyces venezuelae ATCC 10712, complete genome2e-112414BLASTN svgBLASTP svg
NC_015957:68592596859259687895419696Streptomyces violaceusniger Tu 4113 chromosome, complete genome9e-81309BLASTN svgBLASTP svg
NC_015588:24682072468207249482226616Isoptericola variabilis 225 chromosome, complete genome2e-69272BLASTN svgBLASTP svg
NC_015434:4640769*4640769466756226794Verrucosispora maris AB-18-032 chromosome, complete genome2e-50208BLASTN svgBLASTP svg
NC_015953:3782302*3782302381186629565Streptomyces sp. SirexAA-E chromosome, complete genome6e-48200BLASTN svgBLASTP svg
NC_019897:1577015*1577015161988642872Thermobacillus composti KWC4 chromosome, complete genome2e-47198BLASTN svgBLASTP svg
NC_018524:301992*30199232409922108Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome4e-46194BLASTN svgBLASTP svg
NC_003155:62299362299365432631334Streptomyces avermitilis MA-4680, complete genome1e-42182BLASTN svgBLASTP svg
NC_015312:68167868167870428822611Pseudonocardia dioxanivorans CB1190 chromosome, complete genome5e-27131BLASTN svgBLASTP svg
NC_015145:26937492693749273661842870Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome2e-26129BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome4e-24121BLASTN svgBLASTP svg
NC_019673:13847951384795141142926635Saccharothrix espanaensis DSM 44229 complete genome1e-21113BLASTN svgBLASTP svg
NC_014830:12522491252249128855336305Intrasporangium calvum DSM 43043 chromosome, complete genome4e-21111BLASTN svgBLASTP svg
NC_015957:72498737249873727238122509Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_012803:11178751117875114878330909Micrococcus luteus NCTC 2665, complete genome7e-20107BLASTN svgBLASTP svg
NC_015968:74124*7412410053226409Enterobacter asburiae LF7a chromosome, complete genome7e-20107BLASTN svgBLASTP svg
NC_013131:621366*62136664479723432Catenulispora acidiphila DSM 44928, complete genome4e-18101BLASTN svgBLASTP svg
NC_009921:34199783419978344561625639Frankia sp. EAN1pec, complete genome4e-18101BLASTN svgBLASTP svg
NC_009921:32558333255833327496419132Frankia sp. EAN1pec, complete genome4e-18101BLASTN svgBLASTP svg
NC_009142:40463764046376406758021205Saccharopolyspora erythraea NRRL 2338, complete genome4e-18101BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,4e-18101BLASTN svgBLASTP svg
NC_019673:27333272733327275459921273Saccharothrix espanaensis DSM 44229 complete genome2e-1799.6BLASTN svgBLASTP svg
NC_015663:1356982*1356982138951032529Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_009921:53315655331565535374522181Frankia sp. EAN1pec, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_010407:17752271775227180054825322Clavibacter michiganensis subsp. sepedonicus chromosome, complete1e-1593.7BLASTN svgBLASTP svg
NC_013757:72998672998676859938614Geodermatophilus obscurus DSM 43160, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009434:28147428147430109919626Pseudomonas stutzeri A1501, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015434:35070593507059353432627268Verrucosispora maris AB-18-032 chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_003903:26079626079628117820383Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence6e-1487.7BLASTN svgBLASTP svg
NC_006087:14256821425682144554519864Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006087:1483761*1483761150739223632Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006087:28490*284907567147182Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006087:76508176508178509920019Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011149:3863913*3863913388509921187Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1385.7BLASTN svgBLASTP svg
NC_013521:17134161713416173359920184Sanguibacter keddieii DSM 10542, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014659:49081824908182493780229621Rhodococcus equi 103S, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_019673:63943196394319646135767039Saccharothrix espanaensis DSM 44229 complete genome4e-1281.8BLASTN svgBLASTP svg
NC_019673:1039258*1039258106559926342Saccharothrix espanaensis DSM 44229 complete genome4e-1281.8BLASTN svgBLASTP svg
NC_013739:717352*71735274820730856Conexibacter woesei DSM 14684, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008268:34180003418000344059922600Rhodococcus sp. RHA1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_010816:62184962184964504823200Bifidobacterium longum DJO10A, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_013169:1845735*1845735186893023196Kytococcus sedentarius DSM 20547, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_015052:1569255*1569255159297923725Bifidobacterium longum subsp. infantis 157F, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_015052:47194447194450736635423Bifidobacterium longum subsp. infantis 157F, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_015067:45962645962649282633201Bifidobacterium longum subsp. longum JCM 1217, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_020133:5485528*5485528550857423047Mycobacterium liflandii 128FXT, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_008095:67595006759500678099421495Myxococcus xanthus DK 1622, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011886:20973492097349211562818280Arthrobacter chlorophenolicus A6, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_006087:22927912292791231485822068Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015656:2484749*2484749251548430736Frankia symbiont of Datisca glomerata chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_019673:189487*18948721210322617Saccharothrix espanaensis DSM 44229 complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008095:20715002071500210351032011Myxococcus xanthus DK 1622, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_014215:22955002295500232183626337Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,6e-0867.9BLASTN svgBLASTP svg
NC_014391:1226922*1226922125015223231Micromonospora aurantiaca ATCC 27029 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_014815:1490957*1490957151776526809Micromonospora sp. L5 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010002:39808323980832399913918308Delftia acidovorans SPH-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010524:33023983302398332924326846Leptothrix cholodnii SP-6, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010524:93319193319195763824448Leptothrix cholodnii SP-6, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013757:30121303012130303570423575Geodermatophilus obscurus DSM 43160, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014318:61086336108633613113322501Amycolatopsis mediterranei U32 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015312:61752*617528144419693Pseudonocardia dioxanivorans CB1190 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015312:63989316398931641727718347Pseudonocardia dioxanivorans CB1190 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008699:56500565008084424345Nocardioides sp. JS614, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_008699:590000*59000061720127202Nocardioides sp. JS614, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_009138:31535763153576318147527900Herminiimonas arsenicoxydans, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_015957:19685871968587200687438288Streptomyces violaceusniger Tu 4113 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_019673:3041936*3041936305959917664Saccharothrix espanaensis DSM 44229 complete genome9e-0763.9BLASTN svgBLASTP svg
NC_015594:41045441045445109940646Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete4e-0661.9BLASTN svgBLASTP svg
NC_013510:517878*51787856251444637Thermomonospora curvata DSM 43183, complete genome4e-0661.9BLASTN svgBLASTP svg