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Query: NC_016582:10227196 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10227196, End: 10272997, Length: 45802

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome01336BLASTN svgBLASTP svg
NC_015957:72498737249873727238122509Streptomyces violaceusniger Tu 4113 chromosome, complete genome01310BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome01285BLASTN svgBLASTP svg
NC_015957:75330007533000755153218533Streptomyces violaceusniger Tu 4113 chromosome, complete genome0741BLASTN svgBLASTP svg
NC_015957:68592596859259687895419696Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-133486BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-79303BLASTN svgBLASTP svg
NC_009142:5698100*5698100573806239963Saccharopolyspora erythraea NRRL 2338, complete genome1e-59240BLASTN svgBLASTP svg
NC_013729:2157785*2157785219409936315Kribbella flavida DSM 17836, complete genome3e-29139BLASTN svgBLASTP svg
NC_003888:13953191395319141826922951Streptomyces coelicolor A3(2), complete genome4e-25125BLASTN svgBLASTP svg
NC_019897:1224798*1224798126609941302Thermobacillus composti KWC4 chromosome, complete genome4e-22115BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome4e-19105BLASTN svgBLASTP svg
NC_008268:36142436142438312821705Rhodococcus sp. RHA1, complete genome2e-18103BLASTN svgBLASTP svg
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome2e-1799.6BLASTN svgBLASTP svg
NC_020133:48890344889034491001420981Mycobacterium liflandii 128FXT, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_019673:3041936*3041936305959917664Saccharothrix espanaensis DSM 44229 complete genome2e-1593.7BLASTN svgBLASTP svg
NC_015422:3413386*3413386345459941214Alicycliphilus denitrificans K601 chromosome, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_014910:1591003*1591003161459423592Alicycliphilus denitrificans BC chromosome, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_013595:81621818162181819649034310Streptosporangium roseum DSM 43021, complete genome6e-1591.7BLASTN svgBLASTP svg
NC_013131:621366*62136664479723432Catenulispora acidiphila DSM 44928, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_008699:29167522916752293906622315Nocardioides sp. JS614, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_013757:21245212454675925515Geodermatophilus obscurus DSM 43160, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_020302:858218582114074254922Corynebacterium halotolerans YIM 70093 = DSM 44683, complete2e-1179.8BLASTN svgBLASTP svg
NC_018681:867230*86723090173034501Nocardia brasiliensis ATCC 700358 chromosome, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_015312:1893945*1893945191339219448Pseudonocardia dioxanivorans CB1190 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_013421:4714478*4714478478002665549Pectobacterium wasabiae WPP163, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_014151:36119563611956366328251327Cellulomonas flavigena DSM 20109 chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015588:18475001847500187818330684Isoptericola variabilis 225 chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015690:2039215*2039215208264643432Paenibacillus mucilaginosus KNP414 chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015953:25121522512152253676224611Streptomyces sp. SirexAA-E chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_014931:55739425573942559409920158Variovorax paradoxus EPS chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015953:3782302*3782302381186629565Streptomyces sp. SirexAA-E chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015957:88163558816355883412317769Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_021177:4124839*4124839415343928601Streptomyces fulvissimus DSM 40593, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_009921:565947*56594758537019424Frankia sp. EAN1pec, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_007333:430000*43000045449524496Thermobifida fusca YX, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_019673:35591853559185357959920415Saccharothrix espanaensis DSM 44229 complete genome5e-0661.9BLASTN svgBLASTP svg
NC_010612:53011355301135532701825884Mycobacterium marinum M, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_008595:18692841869284189175722474Mycobacterium avium 104, complete genome5e-0661.9BLASTN svgBLASTP svg