Pre_GI: BLASTN Hits

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Query: NC_016582:1 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1, End: 20099, Length: 20099

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013855:56344563447459918256Azospirillum sp. B510 plasmid pAB510a, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_013854:1277106*1277106129609918994Azospirillum sp. B510, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009921:8147947*8147947818742439478Frankia sp. EAN1pec, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009921:3098271*3098271316510166831Frankia sp. EAN1pec, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009921:3384116*3384116340895324838Frankia sp. EAN1pec, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006087:22927912292791231485822068Leifsonia xyli subsp. xyli str. CTCB07, complete genome9e-0660BLASTN svgBLASTP svg
NC_006087:14256821425682144554519864Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014814:42354774235477428692151445Mycobacterium sp. Spyr1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008726:63359616335961637742441464Mycobacterium vanbaalenii PYR-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013235:3812838*3812838384142328586Nakamurella multipartita DSM 44233, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013235:2257899*2257899229859940701Nakamurella multipartita DSM 44233, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_018524:2246225*2246225228118534961Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015312:67179736717973673763819666Pseudonocardia dioxanivorans CB1190 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_015312:63989316398931641727718347Pseudonocardia dioxanivorans CB1190 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_019673:6362458*6362458639102228565Saccharothrix espanaensis DSM 44229 complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003155:210240*21024026219151952Streptomyces avermitilis MA-4680, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003888:38931873893187391788524699Streptomyces coelicolor A3(2), complete genome1e-1799.6BLASTN svgBLASTP svg
NC_021177:20347222034722205851023789Streptomyces fulvissimus DSM 40593, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010572:40986340986342959919737Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_010572:84939468493946855999966054Streptomyces griseus subsp. griseus NBRC 13350, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010572:18850018850021341824919Streptomyces griseus subsp. griseus NBRC 13350, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010572:113201832018Streptomyces griseus subsp. griseus NBRC 13350, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015953:62123666212366625841846053Streptomyces sp. SirexAA-E chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_015953:46732467328409937368Streptomyces sp. SirexAA-E chromosome, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_018750:82105008210500823849928000Streptomyces venezuelae ATCC 10712, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015957:49635004963500498135217853Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-35157BLASTN svgBLASTP svg
NC_015957:19600019600021778021781Streptomyces violaceusniger Tu 4113 chromosome, complete genome7e-25123BLASTN svgBLASTP svg
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg