Some Help

Query: NC_016582:9664000:9680507 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9680507, End: 9681025, Length: 519

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:480000:502178502178502663486Streptosporangium roseum DSM 43021, complete genomeputative phosphohistidine phosphatase, SixA7e-1993.2
NC_012803:361127:365549365549366073525Micrococcus luteus NCTC 2665, complete genomephosphohistidine phosphatase SixA2e-1788.2
NC_013715:193647:209287209287209832546Rothia mucilaginosa DY-18, complete genomephosphohistidine phosphatase SixA7e-1786.7
NC_010338:426388:425879425879426391513Caulobacter sp. K31, complete genomeputative phosphohistidine phosphatase, SixA8e-1786.3
NC_013132:782846:797595797595798095501Chitinophaga pinensis DSM 2588, complete genomeputative phosphohistidine phosphatase, SixA2e-1685.5
NC_014935:1511835:152269015226901523238549Nitratifractor saLSUginis DSM 16511 chromosome, complete genomephosphohistidine phosphatase, sixa1e-1169.3
NC_014616:1065500:108098610809861081543558Bifidobacterium bifidum S17 chromosome, complete genomephosphohistidine phosphatase, SixA9e-1063.2
NC_014638:1043854:106981110698111070368558Bifidobacterium bifidum PRL2010 chromosome, complete genomephosphohistidine phosphatase9e-1063.2
NC_004307:579729:582281582281582838558Bifidobacterium longum NCC2705, complete genomenarrowly conserved hypothetical protein1e-0962.4
NC_009664:1569335:157107015710701571576507Kineococcus radiotolerans SRS30216, complete genomeputative phosphohistidine phosphatase, SixA2e-0858.2
NC_015067:998500:101674310167431017300558Bifidobacterium longum subsp. longum JCM 1217, complete genomephosphoglycerate3e-0857.8
NC_015052:1094825:111776311177631118320558Bifidobacterium longum subsp. infantis 157F, complete genomephosphoglycerate3e-0857.8
NC_021064:2001786:200282320028232003308486Propionibacterium avidum 44067, complete genomehypothetical protein7e-0753.5
NC_016512:305240:306070306070306555486Propionibacterium acnes TypeIA2 P.acn17 chromosome, completephosphoglycerate mutase family protein1e-0652.4