Pre_GI: BLASTP Hits

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Query: NC_016582:9664000:9665416 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9665416, End: 9666942, Length: 1527

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016948:2033311:2033311203331120348281518Mycobacterium intracellulare MOTT-64 chromosome, complete genomemodulator of DNA gyrase5e-170597
NC_005877:864118:8785098785098798611353Picrophilus torridus DSM 9790, complete genomezinc metalloprotease4e-36152
NC_013926:1166454:1184831118483111861951365Aciduliprofundum boonei T469 chromosome, complete genomepeptidase U62 modulator of DNA gyrase5e-35149
NC_002578:828000:8670538670538684201368Thermoplasma acidophilum DSM 1728, complete genomehypothetical protein1e-32141
NC_016051:1385490:1405654140565414070151362Thermococcus sp. AM4 chromosome, complete genomeTldD/PmbA family zinc-dependent protease2e-32140
NC_006624:1952554:1951190195119019525571368Thermococcus kodakarensis KOD1, complete genomezinc-dependent protease, TldD/PmbA family1e-30135
NC_000854:50407:6254962549639971449Aeropyrum pernix K1, complete genomeprobable peptidase1e-26121
NC_015518:1638262:1643231164323116446041374Acidianus hospitalis W1 chromosome, complete genomepeptidase U62 modulator of DNA gyrase3e-26120
NC_012623:1563678:1571210157121015725861377Sulfolobus islandicus Y.N.15.51 chromosome, complete genomepeptidase U62 modulator of DNA gyrase2e-22107
NC_000961:1366000:1386469138646913878451377Pyrococcus horikoshii OT3, complete genomehypothetical protein6e-21102
NC_015942:2544407:2546427254642725478721446Acidithiobacillus ferrivorans SS3 chromosome, complete genomepeptidase U62 modulator of DNA gyrase1e-1998.6
NC_003413:1448377:1468976146897614703431368Pyrococcus furiosus DSM 3638, complete genomehypothetical TLDD protein4e-1996.7
NC_003552:4054908:4056220405622040575751356Methanosarcina acetivorans C2A, complete genomePmbA/TldD family protein1e-1895.1
NC_013209:2782500:2799102279910228005591458Acetobacter pasteurianus IFO 3283-01, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017100:2782303:2798894279889428003511458Acetobacter pasteurianus IFO 3283-03, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017108:2779303:2796231279623127976881458Acetobacter pasteurianus IFO 3283-12, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017111:2779321:2796249279624927977061458Acetobacter pasteurianus IFO 3283-32, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017121:2781000:2797651279765127991081458Acetobacter pasteurianus IFO 3283-07, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017125:2782283:2798874279887428003311458Acetobacter pasteurianus IFO 3283-22, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017146:2782325:2798916279891628003731458Acetobacter pasteurianus IFO 3283-26, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_017150:2689920:2706848270684827083051458Acetobacter pasteurianus IFO 3283-01-42C, complete genomeDNA gyrase modulator TldD5e-1892.8
NC_010003:1242846:1247989124798912494011413Petrotoga mobilis SJ95, complete genomepeptidase U62 modulator of DNA gyrase4e-1789.7
NC_008312:1725763:1740339174033917417961458Trichodesmium erythraeum IMS101, complete genomepeptidase U62, modulator of DNA gyrase2e-1687.4
NC_005955:427142:4405774405774419951419Bartonella quintana str. Toulouse, complete genometldD protein4e-1686.3
NC_011979:1683964:1705965170596517073471383Geobacter sp. FRC-32, complete genomepeptidase U62 modulator of DNA gyrase6e-1685.9
NC_016645:1909507:191158519115851912091507Pyrobaculum sp. 1860 chromosome, complete genometldD modulator of DNA gyrase1e-1585.1
NC_014323:3195178:3209126320912632106311506Herbaspirillum seropedicae SmR1 chromosome, complete genomeZn-dependent protease TldD protein1e-1584.7
NC_012668:160357:1872221872221886671446Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTldD protein probably a protease2e-1584
NC_015633:2919501:2937237293723729386821446Vibrio anguillarum 775 chromosome chromosome I, complete sequenceMicrocin-processing peptidase 24e-1583.2
NC_015222:2136657:2160899216089921623741476Nitrosomonas sp. AL212 chromosome, complete genomepeptidase U62 modulator of DNA gyrase2e-1481.3
NC_014540:2908912:2923270292327029247541485Burkholderia sp. CCGE1003 chromosome 2, complete sequencepeptidase U62 modulator of DNA gyrase4e-1480.1
NC_013416:939668:9554379554379568851449Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTldD2e-1377.8
NC_013642:505518:5230925230925244801389Thermotoga naphthophila RKU-10, complete genomepeptidase U62 modulator of DNA gyrase3e-1377
NC_015707:826649:8455138455138469011389Thermotoga thermarum DSM 5069 chromosome, complete genomemicrocin-processing peptidase 24e-1376.6
NC_016816:1545354:1549725154972515511821458Pantoea ananatis LMG 5342, complete genomeantibiotic maturation peptidase5e-1376.3
NC_011978:1812000:1814393181439318158081416Thermotoga neapolitana DSM 4359, complete genomeTldD protein6e-1376.3
NC_009465:224564:2295482295482309751428Candidatus Vesicomyosocius okutanii HA, complete genomePmbA/TldD family DNA gyrase modulator3e-1170.5
NC_016641:5808113:5811068581106858124621395Paenibacillus terrae HPL-003 chromosome, complete genomepeptidase u62 modulator of DNA gyrase3e-1170.5
NC_013457:979102:9930409930409944251386Vibrio sp. Ex25 chromosome 2, complete genomeputative TldD protein1e-1068.2
NC_008261:381297:3845843845843859691386Clostridium perfringens ATCC 13124, complete genomeTldD/PmbA family protein2e-1067.4
NC_008262:381323:3870103870103883951386Clostridium perfringens SM101, complete genometldD protein truncated1e-0965.1
NC_005070:1144777:1187537118753711889461410Synechococcus sp. WH 8102, complete genomeputative modulator of DNA gyrase; TldD2e-0964.7
NC_008319:1167213:1184118118411811855631446Synechococcus sp. CC9311, complete genomeTldD protein5e-0963.2
NC_020291:552104:5668695668695682541386Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeprotein TldD1e-0861.6
NC_007513:1126914:1132046113204611334581413Synechococcus sp. CC9902, complete genomeputative modulator of DNA gyrase; TldD3e-0860.5
NC_010723:420025:4393744393744407561383Clostridium botulinum E3 str. Alaska E43, complete genomeTldD protein1e-0758.5
NC_010674:426256:4445684445684459501383Clostridium botulinum B str. Eklund 17B, complete genomeTldD protein2e-0757.8
NC_003413:1448377:1470356147035614716841329Pyrococcus furiosus DSM 3638, complete genomehypothetical protein3e-0653.9
NC_003030:249648:2596482596482610751428Clostridium acetobutylicum ATCC 824, complete genomePredicted Zn-dependent protease, TLDD ortholog5e-0653.1
NC_015687:250768:2596462596462610731428Clostridium acetobutylicum DSM 1731 chromosome, complete genomeZn-dependent protease TldD5e-0653.1
NC_006576:456569:4739624739624754311470Synechococcus elongatus PCC 6301, complete genomeputative modulator of DNA gyrase TldD9e-0652.4
NC_007604:1145373:1145373114537311468421470Synechococcus elongatus PCC 7942, complete genomeputative modulator of DNA gyrase; TldD9e-0652.4