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Query: NC_016582:9551123:9562030 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9562030, End: 9562755, Length: 726

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010002:1584500:160910616091061609852747Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family3e-26118
NC_007974:2048000:206835720683572069085729Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family3e-1995.5
NC_003485:602640:622345622345623067723Streptococcus pyogenes MGAS8232, complete genomeputative transcriptional regulator4e-1168.6
NC_008021:531730:574609574609575340732Streptococcus pyogenes MGAS9429, complete genometranscriptional regulator, GntR family2e-1065.9
NC_021177:4124839:413883841388384139617780Streptomyces fulvissimus DSM 40593, complete genomekorSA, regulatory protein7e-0857.8
NC_016114:3575955:358320535832053583984780Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeGntR family transcriptional regulator1e-0756.6
NC_015389:905165:911425911425912195771Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family2e-0756.6
NC_015424:2510764:252788125278812528600720Aeromonas veronii B565 chromosome, complete genometranscriptional regulator of succinyl-CoA synthetase operon2e-0756.2
NC_014532:1713987:172126917212691721979711Halomonas elongata DSM 2581, complete genomehistidine utilization repressor3e-0755.5
NC_003888:3602753:360891636089163609695780Streptomyces coelicolor A3(2), complete genomekorSA, regulatory protein8e-0754.3
NC_015376:2061990:208370120837012084468768Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator1e-0653.5
NC_003888:6103534:613628961362896137068780Streptomyces coelicolor A3(2), complete genometranscriptional regulator2e-0653.1
NC_008497:556365:574068574068574769702Lactobacillus brevis ATCC 367, complete genomeTranscriptional regulator3e-0652
NC_008390:2156188:215618821561882156958771Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, GntR family5e-0651.6
NC_008095:7614000:761995076199507620693744Myxococcus xanthus DK 1622, complete genometranscriptional regulator, GntR family5e-0651.6
NC_007643:1504758:152827515282751529009735Rhodospirillum rubrum ATCC 11170, complete genomeTranscriptional Regulator, Histidine utilization repressor, GntR family9e-0650.8