Pre_GI: BLASTP Hits

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Query: NC_016582:9551123:9556954 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9556954, End: 9557145, Length: 192

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:2651500:266653026665302666781252Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-1581.3
NC_016111:4003290:402001840200184020269252Streptomyces cattleya NRRL 8057, complete genomehypothetical protein4e-1476.6
NC_003888:7337453:735834973583497358552204Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-1476.3
NC_016111:5515462:552017455201745520362189Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-1272
NC_013929:7278414:728795072879507288135186Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1168.2
NC_016111:1484424:148874914887491489009261Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-1167.8
NC_016111:1546505:156251615625161562761246Streptomyces cattleya NRRL 8057, complete genomehypothetical protein7e-1165.9
NC_015953:3313000:332841433284143328632219Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein2e-1064.3
NC_003888:6853107:685965868596586859903246Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-1064.3
NC_003155:3913789:391465539146553914867213Streptomyces avermitilis MA-4680, complete genomehypothetical protein2e-1064.3
NC_016114:907500:914221914221914421201Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein3e-1063.9
NC_016582:9664000:967362796736279673845219Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein9e-1062.4
NC_016111:3577572:358445135844513584663213Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-0961.2
NC_013510:517878:549419549419549610192Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3978e-0958.9
NC_016111:1546505:156278115627811563026246Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-0858.9
NC_016111:3577572:358421535842153584427213Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-0858.5
NC_015957:336500:343693343693343902210Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein1e-0858.5
NC_003155:6295078:630326863032686303480213Streptomyces avermitilis MA-4680, complete genomehypothetical protein7e-0855.8
NC_009953:1581088:159174815917481591939192Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein1e-0755.1
NC_017186:7841740:785274078527407852931192Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein2e-0754.7
NC_014318:7821227:785269478526947852885192Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-0754.7
NC_013595:8553904:856210985621098562315207Streptosporangium roseum DSM 43021, complete genomehypothetical protein3e-0753.9
NC_009953:1034809:104188710418871042078192Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein4e-0753.5
NC_016582:4983222:499046449904644990679216Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein6e-0753.1
NC_006361:498305:507996507996508202207Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-0652
NC_013510:1637730:164834716483471648565219Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3971e-0652
NC_016582:3763476:377244737724473772656210Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein1e-0651.6
NC_013510:1614000:161595216159521616152201Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3971e-0651.6
NC_013510:517878:549180549180549371192Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF3972e-0651.2
NC_016887:5988878:599565059956505995853204Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-0651.2
NC_015434:3755560:376751837675183767712195Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein2e-0650.8
NC_016582:7699420:771727277172727717478207Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-0650.8
NC_016887:4403872:441580044158004416006207Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein3e-0650.8
NC_009380:4944183:495530149553014955489189Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein4e-0650.1
NC_009380:4184695:419084941908494191037189Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein8e-0649.3
NC_009380:581000:590390590390590578189Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein9e-0648.9
NC_008278:6885254:690709169070916907285195Frankia alni ACN14a, complete genomePutative regulator1e-0548.9