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Query: NC_016582:9551123:9554489 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9554489, End: 9555469, Length: 981

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008711:424482:429761429761430702942Arthrobacter aurescens TC1, complete genomeputative Integral membrane protein DUF66e-39161
NC_014221:591785:614960614960615919960Truepera radiovictrix DSM 17093 chromosome, complete genomeprotein of unknown function DUF6 transmembrane2e-1686.3
NC_019842:3921424:393535939353593936270912Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,permease2e-1479.7
NC_020272:20435:284262842629337912Bacillus amyloliquefaciens IT-45, complete genomepermease3e-1479.7
NC_016047:683368:699679699679700581903Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeeama family transporter7e-1478.2
NC_020410:3868573:388088938808893881800912Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative permease2e-1376.6
NC_017188:3900951:390925839092583910139882Bacillus amyloliquefaciens TA208 chromosome, complete genomeputative permease1e-1273.9
NC_017191:3901914:391095039109503911831882Bacillus amyloliquefaciens XH7 chromosome, complete genomepermease1e-1273.9
NC_021182:1188000:119757811975781198474897Clostridium pasteurianum BC1, complete genomeDMT(drug/metabolite transporter) superfamily permease1e-0757.8
NC_015589:2447132:246711424671142468061948Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein6e-0755.1
NC_015379:4249238:425521242552124256129918Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein3e-0653.1
NC_016830:2642881:266016526601652661082918Pseudomonas fluorescens F113 chromosome, complete genomedrug/metabolite transporter permease4e-0652.4
NC_006513:2708213:272562927256292726549921Azoarcus sp. EbN1, complete genomehypothetical protein9e-0651.2