Pre_GI: BLASTP Hits

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Query: NC_016582:9551123:9551123 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9551123, End: 9551986, Length: 864

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:1070500:109744310974431098348906Streptomyces violaceusniger Tu 4113 chromosome, complete genomeAraC family transcriptional regulator1e-64246
NC_012988:670101:672063672063672974912Methylobacterium extorquens DM4, complete genomeAraC family transcriptional regulator1e-42173
NC_013892:2108175:214256721425672143490924Xenorhabdus bovienii SS-2004 chromosome, complete genomeAraC family transcriptional regulator6e-42171
NC_008686:95326:101268101268102167900Paracoccus denitrificans PD1222 chromosome 1, complete sequenceAraC-type transcriptional regulator domain protein1e-39164
NC_015410:2258800:228399222839922284939948Pseudomonas mendocina NK-01 chromosome, complete genomeAraC family transcriptional regulator1e-39164
NC_011146:4505821:451816645181664519101936Geobacter bemidjiensis Bem, complete genometranscriptional regulator, AraC family1e-39163
NC_012691:2097287:211617421161742117124951Tolumonas auensis DSM 9187, complete genometranscriptional regulator, AraC family3e-38159
NC_007509:71954:1023091023091033731065Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, AraC family1e-37156
NC_010512:734834:7382207382207392361017Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, AraC family3e-37155
NC_008062:370902:3742883742883753041017Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, AraC family4e-37155
NC_008544:348500:3521083521083531241017Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, AraC family4e-37155
NC_011146:896000:914844914844915761918Geobacter bemidjiensis Bem, complete genometranscriptional regulator, AraC family6e-37154
NC_020409:1173796:119140111914011192339939Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, AraC family1e-36153
NC_010501:3013103:302656130265613027469909Pseudomonas putida W619, complete genometranscriptional regulator, AraC family2e-36152
NC_003295:2787371:280237428023742803273900Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN2e-36152
NC_010501:3448389:347064834706483471556909Pseudomonas putida W619, complete genometranscriptional regulator, AraC family2e-36152
NC_010512:734834:7518797518797530001122Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, AraC family3e-36152
NC_007509:1383013:1387020138702013880361017Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, AraC family6e-36151
NC_008544:348500:3658523658523669731122Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, AraC family1e-35150
NC_008062:370902:388032388032389012981Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, AraC family9e-36150
NC_010338:426388:446357446357447268912Caulobacter sp. K31, complete genometranscriptional regulator, AraC family8e-36150
NC_008609:112340:128282128282129244963Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, AraC family1e-34147
NC_002516:2222896:224030222403022241291990Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator3e-34145
NC_016002:2825017:284537228453722846346975Pseudogulbenkiania sp. NH8B, complete genomeAraC family transcriptional regulator5e-34144
NC_003295:2787371:279676927967692797659891Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION REGULATOR PROTEIN7e-34144
NC_012660:4669500:467927446792744680179906Pseudomonas fluorescens SBW25 chromosome, complete genomeputative AraC family transcriptional regulator1e-33143
NC_008027:2909000:291245129124512913365915Pseudomonas entomophila L48, complete genometranscription regulator, AraC family4e-33141
NC_015589:1439794:144599514459951446888894Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeAraC-type transcriptional regulator domain-containing protein1e-32140
NC_009092:2282437:229102922910292291928900Shewanella loihica PV-4, complete genometranscriptional regulator, AraC family2e-31136
NC_019744:20500:309113091131894984Cylindrospermum stagnale PCC 7417 plasmid pCYLST.02, completeDNA-binding domain-containing protein, AraC-type3e-31135
NC_009486:1737703:174171917417191742618900Thermotoga petrophila RKU-1 chromosome, complete genomeAraC-like transcriptional regulator5e-31135
NC_016935:4367000:437787743778774378845969Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator8e-31134
NC_013501:176073:176892176892177815924Rhodothermus marinus DSM 4252, complete genometranscriptional regulator, AraC family3e-30132
NC_016935:2347691:242517924251792426072894Paenibacillus mucilaginosus 3016 chromosome, complete genomearac-like transcriptional regulator2e-30132
NC_013592:2968500:299110129911012992003903Dickeya dadantii Ech586, complete genometranscriptional regulator, AraC family7e-30130
NC_012731:2302974:233146423314642332342879Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeAraC family transcriptional regulator3e-29129
NC_010628:675445:690930690930691910981Nostoc punctiforme PCC 73102, complete genometranscriptional regulator, AraC family4e-29128
NC_016830:4639388:464485146448514645618768Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator1e-28127
NC_011769:3712497:371977637197763720675900Desulfovibrio vulgaris str. 'Miyazaki F', complete genometranscriptional regulator, AraC family8e-29127
NC_014479:2505823:251979825197982520709912Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative AraC-like transcriptional regulator2e-28126
NC_014307:2735934:274521727452172746131915Ralstonia solanacearum CFBP2957 chromosome, complete genomeAraC family transcriptional regulator3e-28125
NC_010322:3315024:333232733323273333292966Pseudomonas putida GB-1 chromosome, complete genomeAraC family transcriptional regulator3e-28125
NC_003295:659837:672486672486673451966Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN6e-28124
NC_021066:1712905:173761317376131738563951Raoultella ornithinolytica B6, complete genomehypothetical protein2e-27123
NC_014258:355845:375318375318376244927Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional Activator RhaS1e-27123
NC_005966:1832066:184434818443481845091744Acinetobacter sp. ADP1, complete genomeputative transcriptional regulator (AraC family)4e-27121
NC_008027:2909000:290913229091322910049918Pseudomonas entomophila L48, complete genometranscriptional regulator, AraC family1e-26120
NC_015690:1818333:189580918958091896324516Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator2e-26119
NC_005966:1832066:184087018408701841769900Acinetobacter sp. ADP1, complete genomeputative transcription regulator (AraC family)5e-26118
NC_010814:155834:168011168011168946936Geobacter lovleyi SZ, complete genometranscriptional regulator, AraC family7e-25114
NC_009648:1882500:188609218860921887006915Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ARAC-type regulatory protein6e-24111
NC_016845:2655512:266169226616922662606915Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative ARAC-type regulatory protein6e-24111
NC_009439:3535152:355384935538493554721873Pseudomonas mendocina ymp, complete genomeAraC family transcriptional regulator2e-23109
NC_008010:222516:2251542251542262511098Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, AraC family4e-23108
NC_007952:1416000:143102014310201431988969Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, AraC family1e-21103
NC_014618:2705769:271469127146912715611921Enterobacter cloacae SCF1 chromosome, complete genomeAraC family transcriptional regulator1e-20100
NC_014306:642152:656524656524657459936Erwinia billingiae Eb661, complete genomeTranscriptional regulator, AraC family1e-20100
NC_015856:764651:780275780275781222948Collimonas fungivorans Ter331 chromosome, complete genomeAraC family transcriptional regulator1e-20100
NC_021066:1712905:172143117214311722351921Raoultella ornithinolytica B6, complete genometranscriptional regulator, AraC family protein1e-20100
NC_003143:741169:741169741169742062894Yersinia pestis CO92, complete genomeAraC-family regulatory protein3e-2099.4
NC_008149:650706:650706650706651599894Yersinia pestis Nepal516, complete genomeAraC-family regulatory protein3e-2099.4
NC_008150:3430000:345135934513593452252894Yersinia pestis Antiqua, complete genomeAraC-family regulatory protein3e-2099.4
NC_005810:3333000:333311133331113334004894Yersinia pestis biovar Microtus str. 91001, complete genomeAraC family transcription regulator3e-2099.4
NC_010634:3905369:393070839307083931601894Yersinia pseudotuberculosis PB1/+, complete genomeAraC family transcriptional regulator3e-2099.4
NC_004088:3859173:388047038804703881363894Yersinia pestis KIM, complete genomeAraC-type regulatory protein3e-2099.4
NC_006155:3992818:401925140192514020144894Yersinia pseudotuberculosis IP 32953, complete genomeAraC-family regulatory protein3e-2099.4
NC_009381:522731:522731522731523624894Yersinia pestis Pestoides F chromosome, complete genomeAraC family transcription regulator3e-2099.4
NC_009708:692508:692508692508693401894Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeAraC family transcriptional regulator3e-2099.4
NC_017265:3724500:374583037458303746723894Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative DNA-binding transcriptional regulator3e-2099.4
NC_015224:3820338:385490238549023855795894Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,AraC family transcription regulator3e-2099.4
NC_015424:4251369:425136942513694252271903Aeromonas veronii B565 chromosome, complete genomeputative HTH-type transcriptional regulator YqhC3e-2099.4
NC_017168:341233:363240363240364133894Yersinia pestis A1122 chromosome, complete genomeAraC-family regulatory protein3e-2099.4
NC_017160:737000:737054737054737947894Yersinia pestis D182038 chromosome, complete genomeAraC-family regulatory protein3e-2099.4
NC_017154:734875:734875734875735768894Yersinia pestis D106004 chromosome, complete genomeAraC-family regulatory protein3e-2099.4
NC_014029:792719:792719792719793612894Yersinia pestis Z176003 chromosome, complete genomeAraC-family regulatory protein3e-2099.4
NC_008800:3955284:397664139766413977534894Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,AraC family transcription regulator7e-2098.2
NC_002516:1474000:149701214970121497977966Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator7e-1891.3
NC_011071:1877500:189908918990891900039951Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, AraC family3e-1789.4
NC_014541:1617678:163751416375141638503990Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, AraC family1e-1687
NC_015381:3091500:309659930965993097009411Burkholderia gladioli BSR3 chromosome 1, complete sequenceAraC family transcriptional regulator3e-1685.9
NC_012796:129500:129892129892130776885Desulfovibrio magneticus RS-1, complete genomeAraC family transcriptional regulator8e-1684.3
NC_014842:19411:238252382524475651Pantoea sp. At-9b plasmid pPAT9B05, complete sequence3e-1582.4
NC_015379:908904:930689930689931624936Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, AraC family3e-1479.3
NC_016830:952342:977465977465978373909Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator2e-1376.6
NC_005966:1832066:184589118458911846157267Acinetobacter sp. ADP1, complete genomeputative transcriptional regulator (AraC family)2e-1376.6
NC_015312:848403:857726857726858697972Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeAraC family transcriptional regulator5e-1168.6
NC_011751:1770376:179158517915851791839255Escherichia coli UMN026 chromosome, complete genomeputative HTH-type transcriptional regulator yqhC (fragment)1e-0964.3
NC_011898:1218500:124588812458881246757870Clostridium cellulolyticum H10, complete genometranscriptional regulator, AraC family1e-0860.8
NC_014366:1663034:1664567166456716656041038Gamma proteobacterium HdN1, complete genometranscriptional regulator, AraC family3e-0859.3
NC_007645:829500:8408168408168418501035Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain3e-0859.3
NC_013960:243884:2548952548952559321038Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain-containing protein AraC type4e-0858.9
NC_015733:2581324:2615728261572826167381011Pseudomonas putida S16 chromosome, complete genomeputative transcriptional regulator8e-0858.2
NC_007952:1587500:1599684159968416007661083Burkholderia xenovorans LB400 chromosome 2, complete sequencetranscriptional regulator, AraC family8e-0857.8
NC_007963:3225306:324604832460483247004957Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, AraC family2e-0756.6
NC_016935:2918689:2941139294113929427611623Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein7e-0754.7
NC_016077:702000:723122723122724057936Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein8e-0754.7
NC_020211:3398281:341801134180113418985975Serratia marcescens WW4, complete genomeAraC family transcriptional regulator1e-0654.3
NC_014976:170683:191099191099191818720Bacillus subtilis BSn5 chromosome, complete genomeputative AraC/XylS family transcriptional regulator1e-0654.3
NC_015065:162317:202038202038202922885Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetranscriptional regulator, AraC family1e-0653.9
NC_015428:193817:211001211001211951951Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_014532:2268078:2293904229390422949321029Halomonas elongata DSM 2581, complete genometranscriptional regulator, AraC family2e-0653.1
NC_016944:168530:197883197883198695813Vibrio cholerae IEC224 chromosome I, complete sequenceAraC/XylS family transcriptional regulator1e-0550.8
NC_002505:168532:197873197873198685813Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, AraC/XylS family1e-0550.8