Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:9459566:9475673 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9475673, End: 9476215, Length: 543

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008536:3601841:361920736192073619764558Solibacter usitatus Ellin6076, complete genomeprotein of unknown function DUF16976e-21100
NC_013093:5734002:575324857532485753793546Actinosynnema mirum DSM 43827, complete genomeprotein of unknown function DUF16974e-2097.4
NC_016584:3645245:365021436502143650756543Desulfosporosinus orientis DSM 765 chromosome, complete genomehypothetical protein6e-1477
NC_015500:1236874:124641012464101246949540Treponema brennaborense DSM 12168 chromosome, complete genomeprotein of unknown function DUF16973e-1064.7
NC_016048:4163225:420160142016014202140540Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-0962.8
NC_011837:3814000:384103938410393841590552Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0961.6
NC_009706:3882500:390954839095483910087540Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein3e-0961.6
NC_009464:379377:383739383739384215477Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein6e-0753.9