Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:9459566:9473853 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9473853, End: 9475055, Length: 1203

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:2432879:2434285243428524355441260Thermomonospora curvata DSM 43183, complete genomemembrane protein-like protein4e-32139
NC_013757:2858327:2870210287021028714931284Geodermatophilus obscurus DSM 43160, complete genomemembrane protein-like protein2e-27124
NC_015312:3675148:3680116368011636812821167Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein8e-21101
NC_013131:9711508:9712558971255897138051248Catenulispora acidiphila DSM 44928, complete genomeprotein of unknown function DUF9392e-1480.9
NC_006958:359760:3608123608123619061095Corynebacterium glutamicum ATCC 13032, complete genomemembrane protein2e-1067.8
NC_003450:359759:3608113608113618811071Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein3e-1066.6
NC_009342:464210:4691794691794703901212Corynebacterium glutamicum R chromosome, complete genomehypothetical protein2e-0963.9
NC_019842:3852062:3859313385931338603801068Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein2e-0757.4
NC_009725:3809403:3816686381668638177021017Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein4e-0756.2
NC_020272:84227:1038201038201048871068Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein8e-0755.5
NC_020410:3801583:3808866380886638098821017Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completePredicted membrane protein1e-0655.1