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Query: NC_016582:8243727:8258768 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8258768, End: 8260168, Length: 1401

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:3080290:3105924310592431072821359Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeCellulose 1,4-beta-cellobiosidase2e-169595
NC_014623:3462500:3472247347224734746582412Stigmatella aurantiaca DW4/3-1 chromosome, complete genomecellulose 1,4-beta-cellobiosidase-like protein8e-105380
NC_003902:3666544:3740315374031537418021488Xanthomonas campestris pv. campestris str. ATCC 33913, complete1,4-beta-cellobiosidase3e-103375
NC_003296:673790:7182317182317199491719Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE EXOGLUCANASE A (1,4-BETA-CELLOBIOSIDASE) PROTEIN1e-101370
NC_013510:5175649:518092451809245181331408Thermomonospora curvata DSM 43183, complete genome8e-43175
NC_013929:6371019:6376549637654963775891041Streptomyces scabiei 87.22 chromosome, complete genomeO-glycosylhydrolase7e-1272.4
NC_008595:312861:316495316495317412918Mycobacterium avium 104, complete genomeendoglucanase A1e-1171.2
NC_002944:292974:297219297219298208990Mycobacterium avium subsp. paratuberculosis K-10, complete genomeCelA9e-1168.6
NC_013131:7530000:7547701754770175491641464Catenulispora acidiphila DSM 44928, complete genomeglycoside hydrolase family 66e-0962.4
NC_016604:1285277:1304215130421513052371023Mycobacterium rhodesiae NBB3 chromosome, complete genomecellobiohydrolase A1e-0861.6
NC_020133:77341:9493694936959491014Mycobacterium liflandii 128FXT, complete genomecellobiohydrolase a (1,4-beta-cellobiosidase a) CelA2e-0757.8
NC_010612:103081:1338571338571349091053Mycobacterium marinum M, complete genomecellobiohydrolase a (1,4-beta-cellobiosidase a) CelA2e-0757.4