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Query: NC_016582:8243727:8257202 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8257202, End: 8258500, Length: 1299

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:4934854:4945427494542749468541428Streptomyces bingchenggensis BCW-1 chromosome, complete genomeHNH endonuclease domain protein0644
NC_013205:1548500:1554382155438215556651284Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,HNH endonuclease1e-94347
NC_007412:147757:1497741497741510571284Anabaena variabilis ATCC 29413 plasmid C, complete sequenceHNH endonuclease7e-88324
NC_010003:795355:8383598383598396751317Petrotoga mobilis SJ95, complete genomeHNH endonuclease1e-87323
NC_012034:2555447:2571075257107525724061332Anaerocellum thermophilum DSM 6725, complete genomeHNH endonuclease2e-83310
NC_015520:2567329:2571964257196425733551392Mahella australiensis 50-1 BON chromosome, complete genomeHNH endonuclease1e-80300
NC_010003:1126800:1130742113074211320521311Petrotoga mobilis SJ95, complete genomeHNH endonuclease8e-31135
NC_007950:185500:204748204748205647900Polaromonas sp. JS666 plasmid 2, complete sequencehypothetical protein1e-29131
NC_010418:138325:1430661430661443881323Clostridium botulinum A3 str. Loch Maree plasmid pCLK, completehypothetical protein1e-23111
NC_014219:2931796:293179629317962932281486Bacillus selenitireducens MLS10 chromosome, complete genomeputative HNH endonuclease6e-1892.4
NC_015573:776209:7978837978837990491167Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeHNH endonuclease3e-1790.1
NC_009840:1485383:155234315523431552900558Prochlorococcus marinus str. MIT 9215, complete genomeHNH endonuclease family protein6e-1065.9
NC_007577:1517000:152210415221041522661558Prochlorococcus marinus str. MIT 9312, complete genomeHNH nuclease7e-1065.5
NC_009091:1423677:145547814554781456035558Prochlorococcus marinus str. MIT 9301, complete genomeHNH endonuclease family protein1e-0964.7
NC_005072:1458799:147096914709691471475507Prochlorococcus marinus subsp. pastoris str. CCMP1986, completeHNH endonuclease family protein2e-0963.9
NC_008816:1476209:148181814818181482375558Prochlorococcus marinus str. AS9601, complete genomeHNH endonuclease family protein4e-0963.2
NC_008817:1476473:151244715124471513010564Prochlorococcus marinus str. MIT 9515, complete genomeHNH endonuclease family protein1e-0861.6
NC_013946:2854219:285931328593132859834522Meiothermus ruber DSM 1279 chromosome, complete genomeHNH endonuclease5e-0859.3
NC_005070:1978000:198027619802761980776501Synechococcus sp. WH 8102, complete genomeHNH endonuclease family protein7e-0858.9
NC_008820:2027977:205087620508762051445570Prochlorococcus marinus str. MIT 9303, complete genomeHNH endonuclease family protein9e-0858.5
NC_007516:347824:360869360869361393525Synechococcus sp. CC9605, complete genomeHNH nuclease1e-0655.1
NC_019792:2524130:254117725411772542049873Natronobacterium gregoryi SP2 chromosome, complete genomerestriction endonuclease2e-0654.3
NC_013131:8480384:852191485219148522456543Catenulispora acidiphila DSM 44928, complete genomeHNH endonuclease2e-0654.3
NC_014761:1715377:172672117267211727251531Oceanithermus profundus DSM 14977 chromosome, complete genomehnh endonuclease3e-0653.9
NC_015694:48344:631676316763583417Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequenceHNH endonuclease4e-0653.1