Pre_GI: BLASTP Hits

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Query: NC_016582:8243727:8250390 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8250390, End: 8251691, Length: 1302

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:1751988:1764160176416017654761317Streptomyces bingchenggensis BCW-1 chromosome, complete genomesolute binding lipoprotein2e-95349
NC_013929:257635:2629282629282642051278Streptomyces scabiei 87.22 chromosome, complete genomesolute binding lipoprotein7e-90331
NC_009142:6086000:6103567610356761048261260Saccharopolyspora erythraea NRRL 2338, complete genomeputative sugar binding secreted protein8e-55214
NC_013929:8525000:8537128853712885384021275Streptomyces scabiei 87.22 chromosome, complete genomesubstrate-binding transporter4e-52206
NC_011886:404661:4213504213504226421293Arthrobacter chlorophenolicus A6, complete genomeextracellular solute-binding protein family 18e-52204
NC_010407:3174470:3193095319309531944141320Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative sugar-binding transport lipoprotein2e-50199
NC_013947:6585847:6625447662544766267481302Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeextracellular solute-binding protein family 17e-49195
NC_013521:940495:9554699554699567851317Sanguibacter keddieii DSM 10542, complete genomecarbohydrate-binding protein5e-48192
NC_011567:2327870:2334876233487623362251350Anoxybacillus flavithermus WK1, complete genomeABC-type sugar transport system, periplasmic component6e-45182
NC_009480:99640:1270431270431283201278Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative sugar ABC transporter, binding protein2e-44180
NC_019673:2733327:2738550273855027398181269Saccharothrix espanaensis DSM 44229 complete genomeABC-type transporter, substrate-binding lipoprotein, family 15e-44179
NC_014829:3741843:3753994375399437552951302Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeextracellular solute-binding protein family 12e-36154
NC_011653:1574415:1579050157905015803001251Thermosipho africanus TCF52B, complete genomelactose-binding protein5e-1272.8
NC_013093:2132284:2140041214004121413601320Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 12e-1067.4
NC_013411:2767400:2781619278161927829831365Geobacillus sp. Y412MC61, complete genomeextracellular solute-binding protein family 13e-1067
NC_014915:1909275:1921556192155619229171362Geobacillus sp. Y412MC52 chromosome, complete genomeextracellular solute-binding protein family 13e-1067
NC_015671:874500:8980898980898994231335Cellvibrio gilvus ATCC 13127 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-1065.9
NC_016582:7737930:7748351774835177497091359Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative substrate-binding transport lipoprotein8e-1065.5
NC_017167:1088713:1097975109797510992851311Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1extracellular solute-binding protein3e-0860.5
NC_015577:1462874:1468358146835814696891332Treponema azotonutricium ZAS-9 chromosome, complete genomeputative family 1 extracellular solute-binding protein8e-0755.5
NC_014958:514225:5359135359135372171305Deinococcus maricopensis DSM 21211 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-0652.8