Pre_GI: BLASTP Hits

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Query: NC_016582:8243727:8245003 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8245003, End: 8246679, Length: 1677

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:2305901:2310047231004723116841638Streptomyces coelicolor A3(2), complete genomecytochrome B subunit0697
NC_010572:6293417:6307603630760363092521650Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative cytochrome b subunit0682
NC_016582:10287865:1029895810298958103005351578Streptomyces bingchenggensis BCW-1 chromosome, complete genomecytochrome B subunit0681
NC_015953:1756493:1759444175944417610691626Streptomyces sp. SirexAA-E chromosome, complete genomeCytochrome b/b6 domain-containing protein0680
NC_021177:1922930:1928843192884319304891647Streptomyces fulvissimus DSM 40593, complete genomeUbiquinol-cytochrome c reductase cytochrome b subunit0673
NC_018750:2005229:2011304201130420129261623Streptomyces venezuelae ATCC 10712, complete genomeUbiquinol--cytochrome c reductase, cytochrome B subunit0666
NC_016582:389729:3973833973833990561674Streptomyces bingchenggensis BCW-1 chromosome, complete genomecytochrome B subunit9e-159560
NC_014151:2312000:2320448232044823221991752Cellulomonas flavigena DSM 20109 chromosome, complete genomeCytochrome b/b6 domain protein2e-148526
NC_015514:2414617:2424598242459824263701773Cellulomonas fimi ATCC 484 chromosome, complete genomecytochrome b/b6 domain-containing protein2e-148526
NC_013169:1661135:1667015166701516687601746Kytococcus sedentarius DSM 20547, complete genomecytochrome b subunit of the bc complex1e-144513
NC_009664:3718927:3732634373263437343071674Kineococcus radiotolerans SRS30216, complete genomeCytochrome b/b6 domain8e-143507
NC_015671:1540860:1551951155195115536991749Cellvibrio gilvus ATCC 13127 chromosome, complete genomeCytochrome b/b6 domain-containing protein9e-143507
NC_015588:1965787:1974061197406119757581698Isoptericola variabilis 225 chromosome, complete genomeCytochrome b/b6 domain protein3e-142505
NC_010617:1428902:1438302143830214399691668Kocuria rhizophila DC2201, complete genomemenaquinol-cytochrome c reductase cytochrome b subunit2e-135483
NC_012803:1302261:1309210130921013109041695Micrococcus luteus NCTC 2665, complete genomecytochrome b subunit of the bc complex3e-131469
NC_019673:1656680:1680052168005216817221671Saccharothrix espanaensis DSM 44229 complete genomeUbiquinol-cytochrome c reductase cytochrome b subunit1e-130467
NC_014643:2056280:2147285214728521489491665Rothia dentocariosa ATCC 17931 chromosome, complete genomemenaquinol-cytochrome c reductase cytochrome b subunit2e-130466
NC_017904:4742775:4769119476911947708071689Mycobacterium sp. MOTT36Y chromosome, complete genomecytochrome b subunit of the bc complex4e-130465
NC_014210:3742112:3749054374905437507091656Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Cytochrome b/b6 domain protein1e-127457
NC_004369:2203947:2210357221035722119821626Corynebacterium efficiens YS-314, complete genomecytochrome b of bc1 complex9e-123441
NC_016802:1615748:1621913162191316235351623Corynebacterium diphtheriae HC02 chromosome, complete genomeubiquinol-cytochrome C reductase cytochrome B subunit3e-122439
NC_013964:161105:1875641875641890121449Haloferax volcanii DS2 plasmid pHV3, complete sequencemenaquinol-cytochrome-c reductase7e-57222
NC_012526:2483000:2498367249836724996951329Deinococcus deserti VCD115, complete genomeputative cytochrome b/b6; putative membrane protein3e-47190
NC_008025:316302:3163023163023176151314Deinococcus geothermalis DSM 11300, complete genomecytochrome b/b6-like protein6e-45182
NC_015161:162000:1680091680091693311323Deinococcus proteolyticus MRP chromosome, complete genomeCytochrome b/b6 domain-containing protein2e-42174
NC_014761:74500:9591695916971721257Oceanithermus profundus DSM 14977 chromosome, complete genomemenaquinol-cytochrome c reductase cytochrome b subunit precursor1e-41171
NC_007513:1764739:178150217815021782158657Synechococcus sp. CC9902, complete genomecytochrome b64e-20100
NC_014323:4619344:4644426464442646458321407Herbaspirillum seropedicae SmR1 chromosome, complete genomecytochrome b subunit transmembrane protein2e-1894.4
NC_015856:764651:7646517646517660541404Collimonas fungivorans Ter331 chromosome, complete genomeUbiquinol--cytochrome c reductase, cytochrome B subunit5e-1892.8
NC_011992:773905:7812807812807827011422Acidovorax ebreus TPSY, complete genomeCytochrome b/b6 domain protein1e-1792
NC_010002:6104500:6106633610663361080481416Delftia acidovorans SPH-1, complete genomeCytochrome b/b6 domain1e-1792
NC_015563:1240978:1257623125762312590381416Delftia sp. Cs1-4 chromosome, complete genomecytochrome b/b6 domain-containing protein1e-1792
NC_012856:3000839:3014810301481030162101401Ralstonia pickettii 12D chromosome 1, complete genomeCytochrome b/b6 domain protein1e-1791.7
NC_014307:533975:5388195388195402281410Ralstonia solanacearum CFBP2957 chromosome, complete genomecytochrome bc1 complex (ubiquinol:ferricytochrome C oxidoreductase), transmembrane subunit1e-1791.7
NC_010682:3313944:3353365335336533547651401Ralstonia pickettii 12J chromosome 1, complete sequenceCytochrome b/b6 domain1e-1791.7
NC_009074:3559211:3576144357614435775261383Burkholderia pseudomallei 668 chromosome I, complete sequenceubiquinol-cytochrome c reductase, cytochrome b3e-1790.9
NC_006350:3710641:3727032372703237284141383Burkholderia pseudomallei K96243 chromosome 1, complete sequencecytochrome b3e-1790.9
NC_002932:296557:3142293142293155151287Chlorobium tepidum TLS, complete genomecytochrome b-c complex, cytochrome b subunit3e-1790.5
NC_015740:1017000:1034020103402010352311212Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeubiquinol--cytochrome c reductase, cytochrome b6e-1789.4
NC_009434:1156834:1173194117319411744051212Pseudomonas stutzeri A1501, complete genomeubiquinol--cytochrome c reductase, cytochrome b7e-1789.4
NC_012560:1260031:1270784127078412719951212Azotobacter vinelandii DJ, complete genomeCytochrome b/b69e-1789
NC_021150:1258780:1270796127079612720071212Azotobacter vinelandii CA6, complete genomeCytochrome b/b69e-1789
NC_012724:359444:3633533633533647351383Burkholderia glumae BGR1 chromosome 1, complete genomeCytochrome b subunit of the bc complex9e-1789
NC_008060:2913671:2937696293769629390781383Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencecytochrome b/b6-like2e-1687.8
NC_008542:483761:4875674875674889491383Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceCytochrome b/b6, N-terminal domain2e-1687.8
NC_010508:451184:4555684555684569501383Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceCytochrome b/b6 domain2e-1687.8
NC_015381:429940:4342984342984356801383Burkholderia gladioli BSR3 chromosome 1, complete sequencecytochrome b4e-1687
NC_015731:3274739:3296618329661832978531236Nitrosomonas sp. Is79A3 chromosome, complete genomeCytochrome b/b6 domain-containing protein7e-1685.9
NC_007645:6013242:6021416602141660226481233Hahella chejuensis KCTC 2396, complete genomeCytochrome b subunit of the bc complex2e-1584.3
NC_016915:346000:3634213634213646171197Rickettsia rickettsii str. Hlp#2 chromosome, complete genomecytochrome b3e-1583.6
NC_006833:1011537:1020852102085210220781227Wolbachia endosymbiont strain TRS of Brugia malayi, completeCytochrome b subunit of the bc complex1e-1482
NC_009720:3281000:3283776328377632850501275Xanthobacter autotrophicus Py2, complete genomecytochrome b/b6 domain-containing protein2e-1481.3
NC_014973:1071500:1099352109935211004491098Geobacter sp. M18 chromosome, complete genomecytochrome b/b6 domain-containing protein3e-1480.5
NC_006142:312000:3297733297733309691197Rickettsia typhi str. Wilmington, complete genomeComplex III (mitochondrial electron transport).6e-1479.3
NC_017066:312000:3297873297873309831197Rickettsia typhi str. TH1527 chromosome, complete genomecytochrome b6e-1479.3
NC_015580:141379:1456461456461469291284Novosphingobium sp. PP1Y, complete genomeubiquinol-cytochrome c reductase cytochrome b subunit3e-1377
NC_007797:411630:4142884142884155141227Anaplasma phagocytophilum HZ, complete genomeubiquinol-cytochrome c reductase, cytochrome b3e-1377
NC_012632:2390831:2410275241027524118851611Sulfolobus islandicus M.16.27 chromosome, complete genomecytochrome b/b6 protein3e-1273.9
NC_014006:2999500:3037202303720230385211320Sphingobium japonicum UT26S chromosome 1, complete genomeubiquinol-cytochrome c reductase cytochrome b subunit4e-1273.6
NC_002754:2391867:2413574241357424152471674Sulfolobus solfataricus P2, complete genomeQuinol oxidase (SoxABC), cytochrome B subunit (soxC)4e-1273.2
NC_005295:845000:8550308550308562561227Ehrlichia ruminantium str. Welgevonden, complete genomecytochrome b1e-1172
NC_006831:821000:8307878307878320161230Ehrlichia ruminantium str. Gardel, complete genomeCytochrome B1e-1171.6
NC_006832:825000:8349078349078361361230Ehrlichia ruminantium str. Welgevonden, complete genomeCytochrome B1e-1171.6
NC_017187:1923733:1947016194701619482661251Arcobacter butzleri ED-1, complete genomeubiquinol cytochrome c oxidoreductase cytochrome b subunit1e-1068.6
NC_015942:3185193:3194124319412431953381215Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytochrome b/b6 domain-containing protein2e-1067.8
NC_015557:1412917:1430444143044414316461203Hydrogenobaculum sp. 3684 chromosome, complete genomeCytochrome b/b6 domain protein3e-1067.4
NC_015587:1414304:1430312143031214315141203Hydrogenobaculum sp. SHO chromosome, complete genomeCytochrome b/b6 domain protein3e-1067.4
NC_011761:2785660:2794914279491427961221209Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeubiquinol--cytochrome c reductase, cytochrome b subunit4e-1066.6
NC_011206:2685499:2694753269475326959611209Acidithiobacillus ferrooxidans ATCC 53993, complete genomeCytochrome b/b6 domain4e-1066.6
NC_011126:1430608:1449980144998014511821203Hydrogenobaculum sp. Y04AAS1, complete genomeCytochrome b/b6 domain5e-1066.6
NC_007181:1636425:1636425163642516380381614Sulfolobus acidocaldarius DSM 639, complete genomecytochrome b6e-1066.2
NC_014910:3727887:3756671375667137585991929Alicycliphilus denitrificans BC chromosome, complete genomeoxidoreductase fad-binding domain protein3e-0653.9