Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:8031000:8045572 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8045572, End: 8046918, Length: 1347

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:2640500:2643142264314226446201479Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein1e-156552
NC_016114:4614924:4631396463139646327361341Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein2e-156552
NC_010572:5445081:5461675546167554631411467Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-156552
NC_012032:4385311:4398643439864343998841242Chloroflexus sp. Y-400-fl, complete genomeprotein of unknown function DUF4451e-63244
NC_010175:4375265:4388597438859743898381242Chloroflexus aurantiacus J-10-fl, complete genomeprotein of unknown function DUF4451e-63244
NC_012590:284793:2963742963742977081335Corynebacterium aurimucosum ATCC 700975, complete genomeputative membrane protein1e-63244
NC_010545:236000:2590132590132603381326Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein2e-63243
NC_003450:359759:3983293983293995821254Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein3e-61236
NC_006958:359760:3982783982783995821305Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein3e-61236
NC_009485:1604942:1646796164679616479981203Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein5e-42172
NC_020260:3355814:3360851336085133621161266Cronobacter sakazakii Sp291, complete genomeinner membrane protein9e-40164
NC_013282:551219:5813535813535825281176Cronobacter turicensis, complete genomeUncharacterized protein yjiN5e-39162
NC_015144:1333179:1352792135279213540361245Weeksella virosa DSM 16922 chromosome, complete genomehypothetical protein2e-38160
NC_012791:4794362:4829525482952548308081284Variovorax paradoxus S110 chromosome 1, complete genomeprotein of unknown function DUF4451e-37157
NC_013956:595320:5953205953205966091290Pantoea ananatis LMG 20103 chromosome, complete genomeYjiN2e-35150
NC_016816:3974895:3999958399995840012471290Pantoea ananatis LMG 5342, complete genomeputative inner membrane protein2e-35150
NC_012759:4501206:4502473450247345037531281Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-32140
AC_000091:4569379:4570646457064645719261281Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein2e-32140
NC_011745:5114500:5137674513767451389541281Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-32140
NC_010468:4059436:4079568407956840808601293Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF4452e-32140
NC_008343:1470360:1490483149048314918471365Granulibacter bethesdensis CGDNIH1, complete genomehypothetical membrane spanning protein5e-30132
NC_003888:3138905:3144126314412631453381213Streptomyces coelicolor A3(2), complete genome3e-29129
NC_010694:436500:4377414377414390181278Erwinia tasmaniensis, complete genomeConserved hypothetical protein YjiN8e-28125
NC_013971:3296272:3328293332829333295701278Erwinia amylovora ATCC 49946 chromosome, complete genomemembrane protein4e-27122
NC_013961:441719:4417194417194429961278Erwinia amylovora, complete genomeUncharacterized protein yjiN4e-27122
NC_017162:3817952:3835326383532638366301305Acinetobacter baumannii 1656-2 chromosome, complete genomehypothetical protein3e-23110
NC_010611:3771778:3789083378908337903931311Acinetobacter baumannii ACICU, complete genomepredicted membrane protein3e-23110
NC_009085:3860346:3877508387750838787551248Acinetobacter baumannii ATCC 17978, complete genomehypothetical protein3e-23109
NC_007614:109000:111740111740112558819Nitrosospira multiformis ATCC 25196 chromosome 1, completemembrane protein-like2e-22107