Pre_GI: BLASTP Hits

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Query: NC_016582:7946000:7960285 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7960285, End: 7962462, Length: 2178

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:10287865:1030133210301332103034102079Streptomyces bingchenggensis BCW-1 chromosome, complete genomesuperfamily I DNA and RNA helicase-like protein0899
NC_016113:11500:1173611736137632028Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceATP-dependent DNA helicase0823
NC_013947:1296877:1296877129687712988141938Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeSuperfamily I DNA and RNA helicase-like protein4e-51203
NC_009342:1570000:1585112158511215874632352Corynebacterium glutamicum R chromosome, complete genomehypothetical protein9e-43175
NC_004369:1552847:1568036156803615703812346Corynebacterium efficiens YS-314, complete genomehypothetical protein2e-42174
NC_006361:4574536:4576673457667345788532181Nocardia farcinica IFM 10152, complete genomeputative helicase5e-41169
NC_012803:1552122:1568191156819115704672277Micrococcus luteus NCTC 2665, complete genomeDNA/RNA helicase, superfamily I5e-34146
NC_014210:3170537:3190003319000331931493147Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Superfamily I DNA and RNA helicase1e-29132
NC_013729:380312:3803123803123824802169Kribbella flavida DSM 17836, complete genomeSuperfamily I DNA and RNA helicase-like protein5e-29130
NC_013757:1888850:1891505189150518936552151Geodermatophilus obscurus DSM 43160, complete genomesuperfamily I DNA and RNA helicase1e-23112
NC_017093:7234589:7240800724080072424881689Actinoplanes missouriensis 431, complete genomehypothetical protein2e-22108
NC_013510:2937530:2960722296072229633072586Thermomonospora curvata DSM 43183, complete genomeSuperfamily I DNA and RNA helicase-like protein2e-21104
NC_003366:728859:7480767480767501962121Clostridium perfringens str. 13, complete genomehypothetical protein3e-21104
NC_018524:4988810:5009665500966550118152151Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeuvrD/REP helicase N-terminal domain protein3e-21103
NC_008261:676000:6953866953866975062121Clostridium perfringens ATCC 13124, complete genomeputative helicase7e-21103
NC_008262:654000:6735736735736756932121Clostridium perfringens SM101, complete genomehelicase, putative1e-20102
NC_004557:2607073:2609418260941826115502133Clostridium tetani E88, complete genomeATP-dependent DNA helicase rep8e-1995.9
NC_011898:3973627:3977028397702839793102283Clostridium cellulolyticum H10, complete genomesuperfamily I DNA helicase2e-1894.4
NC_016012:104500:1170321170321191252094Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeATP-dependent DNA helicase6e-1686.7
NC_011773:1050000:1069750106975010720802331Bacillus cereus AH820 chromosome, complete genomeUvrD/Rep family helicase1e-1585.1
NC_008593:841291:8579148579148601992286Clostridium novyi NT, complete genomesuperfamily I DNA helicase3e-1584.3
NC_014171:1018338:1036689103668910390222334Bacillus thuringiensis BMB171 chromosome, complete genomeATP-dependent DNA helicase rep3e-1584
NC_004722:1008500:1021931102193110242642334Bacillus cereus ATCC 14579, complete genomeATP-dependent DNA helicase rep5e-1583.6
NC_017208:1050414:1066257106625710685932337Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeATP-dependent DNA helicase rep2e-1481.3
NC_003909:1139556:113955611395561140365810Bacillus cereus ATCC 10987, complete genomehypothetical protein3e-1480.9
NC_011725:1032500:1048278104827810506112334Bacillus cereus B4264 chromosome, complete genomeUvrD/Rep family helicase3e-1480.9
NC_010184:1017000:1031326103132610336622337Bacillus weihenstephanensis KBAB4, complete genomeUvrD/REP helicase5e-1480.5
NC_011969:1084000:1101280110128011036162337Bacillus cereus Q1 chromosome, complete genomeATP-dependent DNA helicase replicase4e-1480.5
NC_016779:991298:1009000100900010113302331Bacillus cereus F837/76 chromosome, complete genomeUvrD/Rep family helicase6e-1479.7
NC_015275:3407358:3444146344414634464312286Clostridium lentocellum DSM 5427 chromosome, complete genomeUvrD/REP helicase1e-1379.3
NC_011772:1011220:1023748102374810260842337Bacillus cereus G9842, complete genomehelicase, UvrD/Rep family1e-1379
NC_017200:1157835:1176271117627111786042334Bacillus thuringiensis serovar finitimus YBT-020 chromosome,helicase, UvrD/Rep family protein2e-1378.6
NC_014334:1848340:1869908186990818721992292Lactobacillus casei str. Zhang chromosome, complete genomesuperfamily I DNA and RNA helicase2e-1275.1
NC_012491:1187864:1187864118786411902242361Brevibacillus brevis NBRC 100599, complete genomeprobable DNA helicase involved in recombination2e-1274.7
NC_013199:1966334:1984402198440219866932292Lactobacillus rhamnosus Lc 705, complete genomesuperfamily I DNA and RNA helicase-like protein6e-1273.6
NC_015975:441580:4644374644374667162280Lactobacillus ruminis ATCC 27782 chromosome, complete genomeATP-dependent DNA helicase2e-1172
NC_012918:1814000:1826660182666018285491890Geobacter sp. M21 chromosome, complete genomesuperfamily I DNA and RNA helicase-like protein2e-1171.6
NC_020291:4357425:4359233435923343614732241Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehelicase IV2e-1171.2
NC_003909:1139556:1140312114031211418891578Bacillus cereus ATCC 10987, complete genome5e-1170.5
NC_015977:3424178:3522058352205835252703213Roseburia hominis A2-183 chromosome, complete genomeUvrD/Rep helicase family protein1e-1069.3
NC_013406:4023367:4037035403703540394612427Paenibacillus sp. Y412MC10 chromosome, complete genomeUvrD/Rep family helicase1e-1068.9
NC_004567:343500:3840383840383863472310Lactobacillus plantarum WCFS1, complete genomeDNA helicase (putative)4e-1067.4
NC_017093:6461486:6459294645929464614892196Actinoplanes missouriensis 431, complete genomeputative DNA helicase4e-0654.3