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Query: NC_016582:7946000:7955682 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7955682, End: 7957319, Length: 1638

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015514:1923428:1923428192342819261182691Cellulomonas fimi ATCC 484 chromosome, complete genomeglycoside hydrolase family 390696
NC_020210:1908000:1931030193103019325411512Geobacillus sp. GHH01, complete genomebeta-xylosidase9e-77288
NC_014915:1880748:1886797188679718883081512Geobacillus sp. Y412MC52 chromosome, complete genomeglycoside hydrolase family 392e-74280
NC_013411:2739989:2746859274685927483701512Geobacillus sp. Y412MC61, complete genomeglycoside hydrolase family 392e-74280
NC_011898:1558208:1560925156092515624301506Clostridium cellulolyticum H10, complete genomeglycoside hydrolase family 391e-73277
NC_015555:1792242:1796604179660417981061503Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeXylan 1,4-beta-xylosidase3e-73276
NC_009328:1867971:1870441187044118719611521Geobacillus thermodenitrificans NG80-2 chromosome, complete genomebeta-xylosidase9e-73275
NC_016627:2799453:2805633280563328071411509Clostridium clariflavum DSM 19732 chromosome, complete genomebeta-xylosidase4e-71269
NC_019970:929666:9430229430229445271506Thermoanaerobacterium thermosaccharolyticum M0795, complete genomebeta-xylosidase2e-69264
NC_014410:989698:1002052100205210035571506Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Xylan 1,4-beta-xylosidase8e-69261
NC_015588:475723:4880924880924896751584Isoptericola variabilis 225 chromosome, complete genomeXylan 1,4-beta-xylosidase2e-67257
NC_013530:423540:4353984353984369271530Xylanimonas cellulosilytica DSM 15894, complete genomeXylan 1,4-beta-xylosidase8e-58225
NC_014388:55903:7916779167806691503Butyrivibrio proteoclasticus B316 chromosome 2, complete genomebeta-xylosidase Xyl39A1e-54214
NC_013174:2564979:2564979256497925665381560Jonesia denitrificans DSM 20603, complete genomeXylan 1,4-beta-xylosidase8e-53208
NC_015514:3307199:3325492332549233280142523Cellulomonas fimi ATCC 484 chromosome, complete genomeAraC family transcriptional regulator8e-52205
NC_015510:6653159:6687891668789166895641674Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeXylan 1,4-beta-xylosidase3e-23110
NC_013037:6344532:6361616636161663633011686Dyadobacter fermentans DSM 18053, complete genomeglycoside hydrolase family 397e-21102
NC_015737:449914:4499144499144523582445Clostridium sp. SY8519, complete genomebeta-xylosidase1e-20101
NC_015389:1977736:1999776199977620019802205Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, AraC family2e-1687.8