Pre_GI: BLASTP Hits

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Query: NC_016582:7946000:7946912 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7946912, End: 7947877, Length: 966

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012912:2426520:243783624378362438804969Dickeya zeae Ech1591, complete genomeC4-dicarboxylate transporter/malic acid transport protein4e-2099
NC_013592:2338403:234663223466322347600969Dickeya dadantii Ech586, complete genomeC4-dicarboxylate transporter/malic acid transport protein4e-1995.9
NC_017187:500638:520807520807521778972Arcobacter butzleri ED-1, complete genomeC4-dicarboxylate transporter/malic acid transport protein2e-1687
NC_014500:2402881:241519624151962416161966Dickeya dadantii 3937 chromosome, complete genomeTellurite resistance protein tehA3e-1686.3
NC_008576:3812500:381512638151263816079954Magnetococcus sp. MC-1, complete genomeC4-dicarboxylate transporter/malic acid transport protein6e-1581.6
NC_011758:326366:3595543595543607111158Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeC4-dicarboxylate transporter/malic acid transport protein7e-0961.6
NC_015589:814530:824905824905825852948Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeC4-dicarboxylate transporter/malic acid transport protein3e-0859.7
NC_011184:597496:620436620436621425990Vibrio fischeri MJ11 chromosome I, complete sequencetellurite resistance protein8e-0754.7
NC_015723:384000:386286386286387275990Cupriavidus necator N-1 chromosome 2, complete sequenceC4-dicarboxylate transporter/malic acid transporter8e-0754.7
NC_004347:3028000:303313130331313034129999Shewanella oneidensis MR-1, complete genomehypothetical protein3e-0652.8
NC_010001:1806000:181929118192911820217927Clostridium phytofermentans ISDg, complete genomeC4-dicarboxylate transporter/malic acid transport protein4e-0652.4