Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:7101701:7114633 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7114633, End: 7115118, Length: 486

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:3659269:366934736693473669823477Streptomyces cattleya NRRL 8057, complete genomeNUDIX hydrolase8e-60228
NC_015953:3227000:323884332388433239325483Streptomyces sp. SirexAA-E chromosome, complete genomeNUDIX hydrolase1e-46185
NC_013131:9903320:992140199214019921871471Catenulispora acidiphila DSM 44928, complete genomeNUDIX hydrolase1e-44178
NC_016109:3591401:364137336413733641846474Kitasatospora setae KM-6054, complete genomehypothetical protein5e-42169
NC_019673:7400817:740561274056127406073462Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-30132
NC_016111:3486000:349228834922883492800513Streptomyces cattleya NRRL 8057, complete genomeNUDIX hydrolase2e-23108
NC_007333:1743890:177394717739471774435489Thermobifida fusca YX, complete genomehypothetical protein8e-23106
NC_013093:1213908:122711812271181227627510Actinosynnema mirum DSM 43827, complete genomeNUDIX hydrolase5e-23106
NC_017186:9604427:961749596174959617983489Amycolatopsis mediterranei S699 chromosome, complete genomeNUDIX hydrolase2e-22104
NC_014318:9604367:961743596174359617923489Amycolatopsis mediterranei U32 chromosome, complete genomeNUDIX hydrolase2e-22104
NC_019673:3726519:373667337366733737197525Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-21100
NC_014391:6640327:664343266434326643944513Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeNUDIX hydrolase2e-1891.3
NC_014815:2639339:264732926473292647841513Micromonospora sp. L5 chromosome, complete genomenudix hydrolase3e-1890.9
NC_014643:2354507:237547223754722375957486Rothia dentocariosa ATCC 17931 chromosome, complete genomeNUDIX hydrolase1e-1789
NC_014215:1190447:119219311921931192978786Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,NUDIX hydrolase2e-1581.6
NC_016109:1775259:179061117906111791120510Kitasatospora setae KM-6054, complete genomehypothetical protein2e-1065.1
NC_012470:580373:606301606301606777477Streptococcus equi subsp. zooepidemicus, complete genomeMutT/NUDIX family protein4e-0753.9
NC_018080:4465618:447661144766114477315705Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein9e-0752.8
NC_002516:1031386:107123910712391071877639Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-0652.4
NC_011770:4763506:477546347754634776101639Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-0652.4
NC_011894:6731115:673816467381646738631468Methylobacterium nodulans ORS 2060, complete genomeNUDIX hydrolase1e-0652
NC_008463:4566976:457805345780534578691639Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein2e-0651.6
NC_017186:7841740:785755878575587857980423Amycolatopsis mediterranei S699 chromosome, complete genomeNUDIX hydrolase4e-0650.8
NC_014318:7821227:785751278575127857952441Amycolatopsis mediterranei U32 chromosome, complete genomeNUDIX hydrolase5e-0650.4
NC_016582:9422650:943451294345129434967456Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein6e-0650.1
NC_009380:2253500:225493322549332255427495Salinispora tropica CNB-440 chromosome, complete genomeNUDIX hydrolase7e-0649.7
NC_007777:135222:161702161702162172471Frankia sp. CcI3, complete genomeNUDIX hydrolase9e-0649.3