Pre_GI: BLASTP Hits

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Query: NC_016582:7101701:7113309 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7113309, End: 7114514, Length: 1206

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:3659269:3669939366993936711471209Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-144512
NC_013131:9903320:9922317992231799235491233Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, XRE family2e-66253
NC_009953:2808288:2821875282187528234491575Salinispora arenicola CNS-205 chromosome, complete genomeXRE family transcriptional regulator1e-56220
NC_013929:2375613:244642124464212446972552Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-56219
NC_015953:3227000:3239336323933632405561221Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator1e-55217
NC_014318:6539137:6550876655087665521111236Amycolatopsis mediterranei U32 chromosome, complete genomeXRE family transcriptional regulator3e-55216
NC_017186:6539181:6550920655092065521551236Amycolatopsis mediterranei S699 chromosome, complete genomeXRE family transcriptional regulator3e-55216
NC_014391:1226922:1246737124673712479511215Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelix-turn-helix domain-containing protein4e-55215
NC_013929:2375613:2438775243877524400071233Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein3e-52206
NC_014666:1601972:1610862161086216120761215Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein4e-52206
NC_015656:3300747:3311639331163933128621224Frankia symbiont of Datisca glomerata chromosome, complete genomehelix-turn-helix domain-containing protein4e-42172
NC_017093:1411532:1412458141245814136841227Actinoplanes missouriensis 431, complete genomeputative transcriptional regulator7e-39161
NC_019673:7400817:7404248740424874056121365Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-34147
NC_013729:3573000:3584197358419735853901194Kribbella flavida DSM 17836, complete genometranscriptional regulator, XRE family5e-34145
NC_009142:1242850:1259909125990912611081200Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, XRE family1e-31137
NC_013510:2432879:2440113244011324411651053Thermomonospora curvata DSM 43183, complete genomehypothetical protein6e-31135
NC_016111:2402891:2408521240852124098251305Streptomyces cattleya NRRL 8057, complete genomeHelix-turn-helix protein5e-28125
NC_009953:3224412:3231740323174032330771338Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein2e-24114
NC_007333:3244572:3257242325724232584471206Thermobifida fusca YX, complete genomehelix-turn-helix motif3e-24113
NC_016111:613729:6282016282016294151215Streptomyces cattleya NRRL 8057, complete genomeTlmR24e-24112
NC_015434:1313979:1328968132896813303051338Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein2e-23110
NC_013510:4960500:4969443496944349706451203Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family5e-23108
NC_013595:9651019:9664128966412896653721245Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, XRE family2e-22107
NC_013510:747042:7561257561257572761152Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family3e-22106
NC_016109:785819:7985657985657997881224Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator4e-22105
NC_016111:4003290:4014260401426040154621203Streptomyces cattleya NRRL 8057, complete genomeTlmR27e-22105
NC_014666:8488567:8493663849366384948561194Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein7e-22105
NC_014211:439611:4479764479764493881413Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidhypothetical protein1e-21104
NC_016582:5393568:5402040540204054032241185Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative DNA-binding protein2e-21103
NC_015957:1070500:1080106108010610812901185Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein9e-21101
NC_015957:3067919:3083422308342230846511230Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein3e-2099.8
NC_021177:4258102:4265342426534242665261185Streptomyces fulvissimus DSM 40593, complete genomeHelix-turn-helix domain protein4e-2099.4
NC_013093:1213908:1225890122589012271011212Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, XRE family7e-1892
NC_018681:5627940:5645300564530056465261227Nocardia brasiliensis ATCC 700358 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1790.5
NC_013929:5431954:5434505543450554358031299Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein4e-1789.4
NC_018681:3541484:3569953356995335711641212Nocardia brasiliensis ATCC 700358 chromosome, complete genomeputative XRE family transcriptional regulator5e-1789
NC_014318:7480669:7489889748988974910881200Amycolatopsis mediterranei U32 chromosome, complete genomeXRE family transcriptional regulator9e-1685.1
NC_017186:7480714:7489934748993474910971164Amycolatopsis mediterranei S699 chromosome, complete genomeXRE family transcriptional regulator2e-1480.1
NC_018750:3141196:3141196314119631424191224Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein4e-1479.7
NC_015957:8777644:8779399877939987805951197Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein7e-1479
NC_014318:3691:2038620386215371152Amycolatopsis mediterranei U32 chromosome, complete genomeXRE family transcriptional regulator1e-1378.2
NC_017186:3694:2038620386215371152Amycolatopsis mediterranei S699 chromosome, complete genomeXRE family transcriptional regulator1e-1378.2
NC_017186:9604427:9616247961624796174611215Amycolatopsis mediterranei S699 chromosome, complete genomeXRE family transcriptional regulator1e-1377.8
NC_014318:9604367:9616187961618796174011215Amycolatopsis mediterranei U32 chromosome, complete genomeXRE family transcriptional regulator1e-1377.8
NC_015953:3456535:3480274348027434815031230Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator2e-1377.4
NC_018750:6588206:6608500660850066098131314Streptomyces venezuelae ATCC 10712, complete genomeputative transcriptional regulator2e-1273.9
NC_009953:4240000:4248483424848342496911209Salinispora arenicola CNS-205 chromosome, complete genomeXRE family transcriptional regulator2e-1273.9
NC_009953:4240000:4254273425427342554661194Salinispora arenicola CNS-205 chromosome, complete genomeXRE family transcriptional regulator2e-1273.6
NC_007333:1559321:1577211157721115784311221Thermobifida fusca YX, complete genomehelix-turn-helix motif3e-1273.2
NC_015434:4166755:4174279417427941754841206Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1171.6
NC_021177:3867439:3876476387647638777261251Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator, XRE family5e-1168.9
NC_015434:2460053:246879724687972469648852Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0963.5
NC_009921:1813500:1832504183250418337151212Frankia sp. EAN1pec, complete genometranscriptional regulator, XRE family2e-0757.4
NC_007777:4954306:4959583495958349607941212Frankia sp. CcI3, complete genometranscriptional regulator, XRE family2e-0757.4