Pre_GI: BLASTP Hits

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Query: NC_016582:7101701:7108243 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7108243, End: 7108956, Length: 714

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009921:3098271:316431031643103165101792Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-26120
NC_008278:5053899:505976850597685060301534Frankia alni ACN14a, complete genomehypothetical protein1e-24113
NC_015312:1265797:133547413354741336277804Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein1e-24113
NC_015312:1371530:138042813804281381243816Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein1e-24113
NC_007777:135222:158019158019158840822Frankia sp. CcI3, complete genomehypothetical protein1e-23110
NC_009921:8717659:872655087265508727410861Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-23109
NC_008278:1472709:148896014889601489772813Frankia alni ACN14a, complete genomehypothetical protein3e-23108
NC_014318:9120651:9127299912729991295242226Amycolatopsis mediterranei U32 chromosome, complete genomeserine/threonine protein kinase9e-23107
NC_017186:9120711:9127431912743191295842154Amycolatopsis mediterranei S699 chromosome, complete genomeserine/threonine protein kinase9e-22103
NC_008278:5399715:540903454090345409828795Frankia alni ACN14a, complete genomehypothetical protein; putative membrane protein8e-22103
NC_008278:5053899:506337250633725063743372Frankia alni ACN14a, complete genomehypothetical membrane protein9e-21100
NC_009921:3098271:314930031493003150088789Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-20100
NC_007777:4796627:480558048055804806368789Frankia sp. CcI3, complete genomehypothetical protein1e-2099.8
NC_009921:5275694:528551852855185286405888Frankia sp. EAN1pec, complete genomehypothetical protein1e-1583.2
NC_009921:3551036:356499435649943565746753Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-1273.2
NC_009921:3551036:356816435681643568838675Frankia sp. EAN1pec, complete genomeconserved hypothetical protein5e-0961.6