Pre_GI: BLASTP Hits

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Query: NC_016582:7101701:7104115 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7104115, End: 7104738, Length: 624

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:3878660:3898195389819538993431149Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative Type II/IV secretory protein1e-64245
NC_016114:3938721:3949897394989739510451149Streptomyces flavogriseus ATCC 33331 chromosome, complete genometype II secretion system protein E1e-64245
NC_003155:5616000:5624790562479056260911302Streptomyces avermitilis MA-4680, complete genomehypothetical protein2e-63241
NC_013595:480000:4815624815624828751314Streptosporangium roseum DSM 43021, complete genometype II secretion system protein E1e-44179
NC_016948:419500:4206004206004217631164Mycobacterium intracellulare MOTT-64 chromosome, complete genomeconjugative transfer protein TrbB3e-36151
NC_013947:6221877:6230376623037662315391164Stackebrandtia nassauensis DSM 44728 chromosome, complete genometype II secretion system protein E7e-33140
NC_014391:421547:4409884409884421991212Micromonospora aurantiaca ATCC 27029 chromosome, complete genometype II secretion system protein E8e-28123
NC_011959:972798:9727989727989742491452Thermomicrobium roseum DSM 5159, complete genomeCpaF4e-27121
NC_011894:2618951:2656101265610126574921392Methylobacterium nodulans ORS 2060, complete genometype II secretion system protein E2e-24112
NC_013172:2877722:2878981287898128802401260Brachybacterium faecium DSM 4810, complete genomeFlp pilus assembly protein, ATPase CpaF1e-22106
NC_011027:1570955:1603180160318016046101431Chlorobaculum parvum NCIB 8327, complete genometype II secretion system protein E1e-22106
NC_014152:397177:3983513983513996881338Thermincola sp. JR, complete genometype II secretion system protein E2e-22105
NC_008609:2933468:2940511294051129418241314Pelobacter propionicus DSM 2379, complete genometype II secretion system protein E2e-21102
NC_015594:332432:3389723389723402911320Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completetype II secretion system protein E4e-21101
NC_007794:1553000:1566401156640115678041404Novosphingobium aromaticivorans DSM 12444, complete genometype II secretion system protein E1e-2099.8
NC_004460:81687:9516395163964281266Vibrio vulnificus CMCP6 chromosome II, complete sequenceFlp pilus assembly protein1e-2099.8
NC_008536:5259438:5276686527668652780501365Solibacter usitatus Ellin6076, complete genometype II secretion system protein E2e-2099.4
NC_005140:660305:6737836737836750481266Vibrio vulnificus YJ016 chromosome II, complete sequenceTadA protein1e-2099.4
NC_014966:638355:6517616517616530261266Vibrio vulnificus MO6-24/O chromosome II, complete sequencetype II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily1e-2099.4
NC_015588:95697:1071831071831086461464Isoptericola variabilis 225 chromosome, complete genometype II secretion system protein E2e-2099
NC_011894:3885490:3905652390565239071091458Methylobacterium nodulans ORS 2060, complete genometype II secretion system protein E2e-2098.6
NC_006512:952894:9577429577429589651224Idiomarina loihiensis L2TR, complete genomepossible Flp pilus assembly protein CpaF4e-2097.8
NC_007498:2046935:2049554204955420509091356Pelobacter carbinolicus DSM 2380, complete genomeFlp pilus assembly ATPase CpaF6e-2097.4
NC_013416:668152:6812226812226825021281Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTadA9e-2096.7
NC_016513:974402:9874819874819887611281Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completepilus assembly protein CpaF1e-1996.7
NC_012791:4680500:4688267468826746895831317Variovorax paradoxus S110 chromosome 1, complete genometype II secretion system protein E2e-1995.9
NC_021171:4549673:4562285456228545636371353Bacillus sp. 1NLA3E, complete genometype II secretion system protein E2e-1995.5
NC_014931:5594946:5602521560252156038371317Variovorax paradoxus EPS chromosome, complete genometype II secretion system protein E2e-1995.5
NC_012913:167034:1768381768381781181281Aggregatibacter aphrophilus NJ8700, complete genomeTadA3e-1995.1
NC_004605:741000:7549097549097561741266Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeTadA4e-1994.7
NC_013716:4306695:4370955437095543722381284Citrobacter rodentium ICC168, complete genomeputative tight adherence protein A5e-1994.4
NC_009901:2427291:2444505244450524458331329Shewanella pealeana ATCC 700345, complete genometype II secretion system protein E6e-1994
NC_010334:2749250:2758452275845227597801329Shewanella halifaxensis HAW-EB4, complete genometype II secretion system protein E9e-1993.2
NC_007333:2674596:2678597267859726799371341Thermobifida fusca YX, complete genomeputative secretory protein1e-1893.2
NC_002940:1065246:1065246106524610665291284Haemophilus ducreyi 35000HP, complete genometight adherence protein A3e-1892
NC_004463:3857763:3864576386457638659521377Bradyrhizobium japonicum USDA 110, complete genomecomponent of type IV pilus3e-1891.7
NC_014830:532122:5436725436725450601389Intrasporangium calvum DSM 43043 chromosome, complete genometype II secretion system protein E4e-1891.3
NC_016002:2453919:2494414249441424957721359Pseudogulbenkiania sp. NH8B, complete genometype II secretion system protein E4e-1891.3
NC_011886:2950411:2971042297104229725171476Arthrobacter chlorophenolicus A6, complete genometype II secretion system protein E6e-1890.9
NC_016884:813000:8199568199568213021347Sulfobacillus acidophilus DSM 10332 chromosome, complete genometype II secretion system protein E8e-1890.5
NC_003888:5443832:5445896544589654472331338Streptomyces coelicolor A3(2), complete genomesecretory protein9e-1890.1
NC_008260:228475:2388462388462400181173Alcanivorax borkumensis SK2, complete genometype II secretion system protein9e-1890.1
NC_015757:2844599:2856963285696328582911329Sulfobacillus acidophilus TPY chromosome, complete genometype II secretion system protein E8e-1890.1
NC_010501:908000:9356599356599369151257Pseudomonas putida W619, complete genometype II secretion system protein E2e-1789
NC_008786:266959:2691102691102710291920Verminephrobacter eiseniae EF01-2, complete genometype II secretion system protein E5e-1787.8
NC_011886:2950411:2978427297842729799231497Arthrobacter chlorophenolicus A6, complete genometype II secretion system protein E4e-1787.8
NC_008541:3282415:3294316329431632957311416Arthrobacter sp. FB24 chromosome 1, complete sequencetype II secretion system protein E6e-1787.4
NC_008541:3282415:3301908330190833033951488Arthrobacter sp. FB24 chromosome 1, complete sequencetype II secretion system protein E6e-1787.4
NC_007614:2675302:2680898268089826822561359Nitrosospira multiformis ATCC 25196 chromosome 1, completetype II secretion system protein E7e-1787
NC_002932:440191:4538194538194552611443Chlorobium tepidum TLS, complete genometype II secretion system protein9e-1786.7
NC_013223:1349000:1365926136592613673351410Desulfohalobium retbaense DSM 5692, complete genometype II secretion system protein E2e-1685.9
NC_010718:2460893:2463322246332224653552034Natranaerobius thermophilus JW/NM-WN-LF, complete genometype II secretion system protein E8e-1683.6
NC_018691:198909:2092542092542104201167Alcanivorax dieselolei B5 chromosome, complete genomeType II secretion system protein9e-1683.6
NC_015145:2942500:2960110296011029615731464Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeFlp pilus assembly protein, ATPase CpaF1e-1583.2
NC_005810:3333000:3343273334327333445591287Yersinia pestis biovar Microtus str. 91001, complete genomeputative type II secretion protein2e-1582.4
NC_008149:650706:6608696608696621551287Yersinia pestis Nepal516, complete genometype II secretion protein2e-1582.4
NC_008150:3430000:3440797344079734420831287Yersinia pestis Antiqua, complete genomeputative type II secretion protein2e-1582.4
NC_010634:3905369:3920157392015739214431287Yersinia pseudotuberculosis PB1/+, complete genometype II secretion system protein E2e-1582.4
NC_010159:259695:2704372704372717231287Yersinia pestis Angola, complete genometype II/IV secretion system protein2e-1582.4
NC_003143:741169:7513317513317526171287Yersinia pestis CO92, complete genomeputative type II secretion protein2e-1582.4
NC_004088:3859173:3869915386991538712011287Yersinia pestis KIM, complete genomesecretion NTP hydrolase2e-1582.4
NC_006155:3992818:4008696400869640099821287Yersinia pseudotuberculosis IP 32953, complete genomeputative type IV secretion ATPase2e-1582.4
NC_009381:522731:5328925328925341781287Yersinia pestis Pestoides F chromosome, complete genometype II secretion protein2e-1582.4
NC_014029:792719:8028758028758041191245Yersinia pestis Z176003 chromosome, complete genometype II secretion protein2e-1582.4
NC_010465:733916:7430937430937443791287Yersinia pseudotuberculosis YPIII, complete genometype II secretion system protein E2e-1582.4
NC_017168:341233:3526853526853539711287Yersinia pestis A1122 chromosome, complete genomeputative type II secretion protein2e-1582.4
NC_017160:737000:7472167472167485021287Yersinia pestis D182038 chromosome, complete genomeputative type II secretion protein2e-1582.4
NC_017154:734875:7450387450387463241287Yersinia pestis D106004 chromosome, complete genomeputative type II secretion protein2e-1582.4
NC_009708:692508:7027247027247040101287Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype II/IV secretion system protein2e-1582.4
NC_016613:2759908:2775461277546127769001440Vibrio sp. EJY3 chromosome 1, complete sequenceFlp pilus assembly protein3e-1582
NC_017265:3724500:3735275373527537365611287Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Type II/IV secretion system ATP hydrolaseTadA/VirB11/CpaF, TadA subfamily9e-1580.1
NC_008800:3955284:3966363396636339676371275Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative tight adherance operon protein1e-1479.3
NC_015224:3820338:3844668384466838459121245Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative tight adherance operon protein2e-1478.6
NC_008541:2989500:2994243299424329954661224Arthrobacter sp. FB24 chromosome 1, complete sequencetype II secretion system protein E5e-1374.3
NC_015145:2693749:2695541269554126967641224Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeFlp pilus assembly protein, ATPase CpaF6e-1373.9
NC_011886:2696671:2699765269976527009881224Arthrobacter chlorophenolicus A6, complete genometype II secretion system protein E2e-1272.8
NC_013174:923737:9225119225119237461236Jonesia denitrificans DSM 20603, complete genometype II secretion system protein E4e-1271.6
NC_014387:79808:7980879808810491242Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeFlp pilus assembly protein ATPase TadA1e-1169.7
NC_012778:2049694:2049694204969420509141221Eubacterium eligens ATCC 27750, complete genomepilus assembly protein CpaF1e-1169.3
NC_014151:1373937:137687913768791377505627Cellulomonas flavigena DSM 20109 chromosome, complete genome8e-1167
NC_015574:2021300:2033802203380220354181617Methanobacterium sp. SWAN-1 chromosome, complete genometype II secretion system protein E4e-1064.7
NC_015216:434752:4390974390974407221626Methanobacterium sp. AL-21 chromosome, complete genometype ii secretion system protein E4e-0961.6
NC_016582:10137951:1013795110137951101393001350Streptomyces bingchenggensis BCW-1 chromosome, complete genometype II secretion system protein E4e-0858.2
NC_015186:2839668:286410828641082865067960Acidiphilium multivorum AIU301, complete genomeconjugal transfer protein TrbB2e-0755.8
NC_010617:988758:1007324100732410084691146Kocuria rhizophila DC2201, complete genomehypothetical protein2e-0755.8
NC_015957:2678544:2706187270618727075301344Streptomyces violaceusniger Tu 4113 chromosome, complete genometype II secretion system protein E2e-0755.5
NC_003888:4927170:4946742494674249480491308Streptomyces coelicolor A3(2), complete genomeprotein kinase3e-0755.1
NC_015593:1587684:159782815978281598793966Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeP-type DNA transfer ATPase VirB116e-0753.9
NC_013385:759420:7875947875947888891296Ammonifex degensii KC4, complete genometype II secretion system protein E9e-0753.5