Pre_GI: BLASTP Hits

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Query: NC_016582:6811273:6822795 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 6822795, End: 6823310, Length: 516

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:1799594:182110018211001821615516Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-52205
NC_016109:6640000:664830166483016648822522Kitasatospora setae KM-6054, complete genomehypothetical protein1e-49195
NC_016109:4753493:476714647671464767670525Kitasatospora setae KM-6054, complete genomehypothetical protein2e-43174
NC_013929:6343000:635278863527886353318531Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein5e-41166
NC_003903:167825:178395178395178949555Streptomyces coelicolor A3(2) plasmid SCP1, complete sequencehypothetical protein2e-40164
NC_003888:3111998:312391431239143124393480Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-37154
NC_003155:6295078:630117763011776301710534Streptomyces avermitilis MA-4680, complete genomehypothetical protein4e-35147
NC_016109:4455158:446636944663694466818450Kitasatospora setae KM-6054, complete genomehypothetical protein4e-34143
NC_018524:2246225:225237322523732252885513Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein2e-27121
NC_016111:5515462:552224355222435522422180Streptomyces cattleya NRRL 8057, complete genomehypothetical protein8e-23106
NC_016887:221788:232330232330232860531Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein3e-2097.4
NC_016887:1093609:110189211018921102413522Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein9e-1992.8
NC_006361:4098469:410678841067884107303516Nocardia farcinica IFM 10152, complete genomehypothetical protein3e-1891.3
NC_018524:2246225:225166022516602252202543Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein2e-1374.7
NC_010572:8493946:528052805813534Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1374.7
NC_010572:1:528052805813534Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1374.7
NC_010572:8493946:854011785401178540650534Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1374.7
NC_013510:465188:481615481615482160546Thermomonospora curvata DSM 43183, complete genomehypothetical protein7e-1166.6
NC_010572:5445081:547240554724055472974570Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-0858.9
NC_016109:7445603:745113474511347451610477Kitasatospora setae KM-6054, complete genomehypothetical protein4e-0857.4
NC_021177:2766910:277926227792622780014753Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein2e-0755.1
NC_007333:810381:844984844984845577594Thermobifida fusca YX, complete genomehypothetical protein4e-0650.8
NC_008278:6885254:690602469060246906587564Frankia alni ACN14a, complete genomehypothetical protein6e-0650.1