Pre_GI: BLASTP Hits

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Query: NC_016582:5769080:5780696 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5780696, End: 5781226, Length: 531

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:3159234:316146431614643162048585Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-54210
NC_021177:4124839:414665741466574147223567Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase ECF-subfamily sigma factor2e-1995.1
NC_015953:3782302:380522238052223805776555Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-1889.7
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor7e-1683.2
NC_015434:4640769:466706546670654667562498Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein1e-1479.3
NC_013595:3952196:396014139601413960653513Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1272.4
NC_015957:527777:538567538567539109543Streptomyces violaceusniger Tu 4113 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1272.4
NC_015434:3581001:359056835905683591095528Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein9e-1269.7
NC_009664:4423829:467450146745014674992492Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1066.2
NC_014666:4547873:455674645567464557366621Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1064.7
NC_014666:4547873:455305045530504553733684Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0962.4
NC_014830:4012999:100361003610545510Intrasporangium calvum DSM 43043 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0960.5
NC_017955:3670670:368276836827683683406639Modestobacter marinus, complete genomeRNA polymerase sigma-E factor7e-0960.1
NC_014318:1537732:154374515437451544242498Amycolatopsis mediterranei U32 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor6e-0857
NC_013131:7530000:754581375458137546373561Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.2
NC_017093:3777178:379561837956183796130513Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor3e-0754.7
NC_013947:3406000:341769134176913418221531Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily3e-0754.7
NC_009664:4696961:473045147304514731020570Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0651.6
NC_013510:5175649:517647651764765177051576Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_013729:6217500:621908162190816219575495Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0650.1
NC_016109:2938000:295136229513622951883522Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor7e-0650.1
NC_015671:1865752:188091018809101881560651Cellvibrio gilvus ATCC 13127 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit8e-0650.1