Pre_GI: BLASTP Hits

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Query: NC_016582:5769080:5770430 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5770430, End: 5771146, Length: 717

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010162:9311465:931658793165879317582996Sorangium cellulosum 'So ce 56', complete genomeputative transcriptional regulator3e-37155
NC_013947:1537275:154742115474211548170750Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family1e-36153
NC_003888:4750489:477221547722154773021807Streptomyces coelicolor A3(2), complete genometetR family transcriptional regulatory protein8e-32137
NC_015953:2603526:261081926108192611727909Streptomyces sp. SirexAA-E chromosome, complete genomeGntR family transcriptional regulator7e-23107
NC_013595:3541012:355596035559603556841882Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family2e-21102
NC_015671:3093596:309531530953153096085771Cellvibrio gilvus ATCC 13127 chromosome, complete genomeregulatory protein TetR4e-1995.1
NC_014210:4122514:412595441259544126646693Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family7e-1684
NC_013929:5850599:586537458653745866114741Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator1e-1376.6
NC_013595:41245:412454124541949705Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family1e-1273.6
NC_003155:622993:634378634378635061684Streptomyces avermitilis MA-4680, complete genomeTetR-family transcriptional regulator2e-1272.4
NC_013947:1537275:155405415540541554905852Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family2e-1272.4
NC_013947:1696671:172178617217861722718933Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family4e-1168.6
NC_008595:5168941:520266052026605203292633Mycobacterium avium 104, complete genometranscriptional regulator, TetR family protein5e-1168.2
NC_016109:327826:332145332145332954810Kitasatospora setae KM-6054, complete genomeputative TetR family transcriptional regulator2e-0962.8
NC_013757:21245:245362453625210675Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family3e-0962
NC_014221:1518583:152696715269671527650684Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, TetR family7e-0960.8
NC_015434:2683631:270247427024742703091618Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator1e-0860.5
NC_019673:8161242:816215981621598162875717Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family1e-0860.1
NC_016111:986936:100046210004621001124663Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator9e-0857.4
NC_014391:1317957:132412413241241324828705Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeregulatory protein TetR2e-0756.2
NC_013757:3717500:373045537304553731231777Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family3e-0755.5
NC_017904:1831071:183107118310711831727657Mycobacterium sp. MOTT36Y chromosome, complete genomeregulatory protein TetR5e-0754.7
NC_008686:1439328:145266814526681453366699Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, TetR family9e-0753.9
NC_013131:4473410:449156644915664492117552Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, TetR family1e-0653.1
NC_009921:3419978:343335534333553434005651Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family4e-0652