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Query: NC_016582:5393568:5416504 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5416504, End: 5419071, Length: 2568

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018524:4848154:4853369485336948556392271Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein1e-42175
NC_014210:2597000:2630410263041026327192310Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,putative sensor with HAMP domain2e-41171
NC_009953:1484000:1500051150005115024562406Salinispora arenicola CNS-205 chromosome, complete genomehistidine kinase4e-40167
NC_006361:1827991:1827991182799118301322142Nocardia farcinica IFM 10152, complete genomeputative histidine kinase3e-39164
NC_012522:5895946:5895946589594658985972652Rhodococcus opacus B4, complete genomehypothetical protein6e-35149
NC_009921:465683:4656834656834687633081Frankia sp. EAN1pec, complete genomeputative sensor with HAMP domain9e-32139
NC_013595:3388000:3402964340296434053812418Streptosporangium roseum DSM 43021, complete genomehypothetical protein7e-30133
NC_014391:4644500:4647734464773446502712538Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeATP-binding region ATPase domain-containing protein4e-29130
NC_013510:1637730:1637730163773016391871458Thermomonospora curvata DSM 43183, complete genomeATP-binding region ATPase domain protein1e-26122
NC_016582:8711199:8738576873857687398711296Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP-binding region, ATPase-like protein3e-21104
NC_015957:115133:1180461180461196531608Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-binding region ATPase domain-containing protein1e-1999
NC_013093:5734002:5734002573400257358941893Actinosynnema mirum DSM 43827, complete genomeATP-binding region ATPase domain protein3e-1791.3
NC_016109:4199839:4203876420387642051501275Kitasatospora setae KM-6054, complete genomeputative protein kinase7e-1789.7
NC_016114:7116141:7122134712213471232881155Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeATP-binding region ATPase domain-containing protein2e-1688.6
NC_015957:9801884:9811631981163198127941164Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-binding region ATPase domain-containing protein1e-1482.4
NC_003888:7706226:7706226770622677077431518Streptomyces coelicolor A3(2), complete genomesensor histidine-kinase1e-1379
NC_003888:3111998:3134618313461831362731656Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-0861.2
NC_014550:615609:6169476169476184851539Arthrobacter arilaitensis Re117, complete genomesignal transduction histidine kinase1e-0759.3
NC_013159:3554389:3556288355628835576371350Saccharomonospora viridis DSM 43017, complete genomesignal transduction histidine kinase5e-0757.4