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Query: NC_016582:5393568:5406068 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5406068, End: 5406421, Length: 354

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:1070500:107537010753701075732363Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein1e-49194
NC_003888:4314389:432852143285214328871351Streptomyces coelicolor A3(2), complete genomeregulatory protein7e-38155
NC_013929:5927935:593945559394555939832378Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein3e-36150
NC_013510:5115500:513536151353615135750390Thermomonospora curvata DSM 43183, complete genomehypothetical protein4e-1476.6
NC_014165:92500:100841100841101176336Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein6e-1372.8
NC_003888:5790104:581081058108105811163354Streptomyces coelicolor A3(2), complete genomeregulatory protein4e-1063.5
NC_014210:723719:734254734254734586333Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein2e-0961.2
NC_013595:9547254:956095695609569561309354Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-0960.8
NC_007777:4016000:402857940285794028914336Frankia sp. CcI3, complete genomeputative regulatory protein4e-0960.1
NC_021177:3997727:401169340116934012037345Streptomyces fulvissimus DSM 40593, complete genomeReplication activator protein pra1e-0858.2
NC_003155:4592000:462038646203864620742357Streptomyces avermitilis MA-4680, complete genomereplication activator protein Pra3e-0857
NC_013929:5248000:526216752621675262523357Streptomyces scabiei 87.22 chromosome, complete genomereplication activator protein7e-0855.8
NC_018750:4333064:433945243394524339784333Streptomyces venezuelae ATCC 10712, complete genomeputative replication activator protein Pra1e-0755.1
NC_003155:4906639:491244549124454912801357Streptomyces avermitilis MA-4680, complete genomereplication activator protein Pra2e-0754.7
NC_010572:3925803:393532939353293935661333Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative replication activator protein Pra4e-0753.5
NC_013235:682902:696975696975697313339Nakamurella multipartita DSM 44233, complete genomehypothetical protein8e-0752.4