Pre_GI: BLASTP Hits

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Query: NC_016582:4983222:5002412 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5002412, End: 5003218, Length: 807

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013223:448343:472519472519473226708Desulfohalobium retbaense DSM 5692, complete genome2e-0653.5
NC_019842:710308:729503729503730405903Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,CDP-glucose 4,6-dehydratase7e-0754.7
NC_010364:84900:107292107292108059768Halobacterium salinarum R1, complete genomedehydratase homolog6e-21101
NC_010407:2038499:205593820559382056747810Clavibacter michiganensis subsp. sepedonicus chromosome, completehypothetical protein2e-26119
NC_007503:919808:934570934570935511942Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein5e-0652
NC_002607:81452:107649107649108428780Halobacterium sp. NRC-1, complete genomehypothetical protein5e-21101
NC_019974:1280500:129022912902291291029801Natronococcus occultus SP4, complete genomeNAD dependent epimerase/dehydratase family5e-2098.2
NC_020064:79422:990499904999798750Serratia marcescens FGI94, complete genomeNAD dependent epimerase/dehydratase family protein8e-1787.8
NC_009832:110239:134688134688135437750Serratia proteamaculans 568, complete genomeNAD-dependent epimerase/dehydratase7e-1891.3
NC_016642:2440070:245290724529072453884978Pseudovibrio sp. FO-BEG1 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0859.7
NC_013642:400651:430581430581431552972Thermotoga naphthophila RKU-10, complete genomeNAD-dependent epimerase/dehydratase6e-0754.7
NC_009483:1936486:195557419555741956503930Geobacter uraniireducens Rf4 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0653.1
NC_010084:2717443:272357127235712724536966Burkholderia multivorans ATCC 17616 chromosome 1, completeNAD-dependent epimerase/dehydratase7e-0651.2
NC_007963:2777066:278089527808952781698804Chromohalobacter salexigens DSM 3043, complete genomeNAD-dependent epimerase/dehydratase2e-33142
NC_013406:3975512:399781439978143998590777Paenibacillus sp. Y412MC10 chromosome, complete genomeNAD-dependent epimerase/dehydratase7e-28124
NC_014829:4392799:439853943985394399384846Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-0962.4
NC_013922:138246:177182177182178168987Natrialba magadii ATCC 43099 chromosome, complete genomeNAD-dependent epimerase/dehydratase7e-0754.7
NC_015151:1063617:106687810668781067810933Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0652
NC_008391:2253188:227620422762042277040837Burkholderia cepacia AMMD chromosome 2, complete sequenceNAD-dependent epimerase/dehydratase2e-40166
NC_015567:69190:924529245293201750Serratia sp. AS9 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-1789
NC_013851:228953:248979248979249965987Allochromatium vinosum DSM 180 chromosome, complete genomeNAD-dependent epimerase/dehydratase5e-1065.1
NC_015957:2726816:272909927290992730097999Streptomyces violaceusniger Tu 4113 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-0653.5
NC_015953:4385419:439898643989864399783798Streptomyces sp. SirexAA-E chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-79295
NC_015566:69190:924529245293201750Serratia sp. AS12 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-1789
NC_015167:1055145:107433710743371075068732Cellulophaga lytica DSM 7489 chromosome, complete genomeNAD-dependent epimerase/dehydratase9e-1477.4
NC_008701:1607419:160961116096111610516906Pyrobaculum islandicum DSM 4184, complete genomeNAD-dependent epimerase/dehydratase7e-0754.7
NC_013158:1027015:105164010516401052623984Halorhabdus utahensis DSM 12940, complete genomeNAD-dependent epimerase/dehydratase1e-0653.5
NC_014365:2359760:237314123731412374049909Desulfarculus baarsii DSM 2075 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0652.8
NC_014205:842314:851919851919852878960Staphylothermus hellenicus DSM 12710 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0652
NC_017080:1981788:200399920039992004862864Phycisphaera mikurensis NBRC 102666, complete genomeNAD-dependent epimerase/dehydratase family protein2e-1686.3
NC_015416:1542202:155561115556111556567957Methanosaeta concilii GP-6 chromosome, complete genomeNAD-dependent nucleotide sugar epimerase6e-0755.1
NC_020133:142790:159344159344160324981Mycobacterium liflandii 128FXT, complete genomenucleoside-diphosphate-sugar epimerase5e-0651.6
NC_007426:2248000:227700622770062277992987Natronomonas pharaonis DSM 2160, complete genomenucleoside-diphosphate-sugar epimerase 1 (probable UDP-glucose 4-epimerase )2e-0756.2
NC_011959:1965158:196638519663851967101717Thermomicrobium roseum DSM 5159, complete genomeputative oxidoreductase protein6e-31134
NC_008278:2813362:283053228305322831158627Frankia alni ACN14a, complete genomePutative UDP glucose epimerase (partial)6e-30131
NC_012587:1203103:122344412234441224343900Rhizobium sp. NGR234, complete genomeputative UDP-glucose 4-epimerase3e-0755.8
NC_010645:1341475:1344564134456413456311068Bordetella avium 197N, complete genomesugar epimerase/dehydratase4e-0652
NC_015856:268034:289332289332290171840Collimonas fungivorans Ter331 chromosome, complete genomeUDP-glucose 4-epimerase4e-32138
NC_018876:516220:533235533235534179945Methanolobus psychrophilus R15 chromosome, complete genomeUDP-glucose 4-epimerase4e-0652.4
NC_010804:782222:800237800237801202966Burkholderia multivorans ATCC 17616 chromosome 1, completeUDP-glucose 4-epimerase7e-0651.2
NC_009725:692237:739731739731740699969Bacillus amyloliquefaciens FZB42, complete genomeYfnG8e-0754.3