Pre_GI: BLASTP Hits

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Query: NC_016582:4983222:4999796 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4999796, End: 5000206, Length: 411

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009480:739395:742620742620743141522Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative endoribonuclease L-PSP1e-32138
NC_018581:759932:766157766157766543387Gordonia sp. KTR9 chromosome, complete genomePutative translation initiation inhibitor, yjgF family2e-1787.4
NC_015125:788931:793902793902794312411Microbacterium testaceum StLB037, complete genomeputative translation initiation inhibitor, yjgF family2e-41167
NC_018681:2447871:245204224520422452449408Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein2e-42170
NC_015953:2512152:252655925265592527026468Streptomyces sp. SirexAA-E chromosome, complete genomeendoribonuclease L-PSP2e-47187