Pre_GI: BLASTP Hits

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Query: NC_016582:4983222:4996375 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4996375, End: 4996707, Length: 333

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009937:4392108:439582343958234396755933Azorhizobium caulinodans ORS 571, complete genomeputative insertion sequence transposase protein9e-0752.4
NC_009937:4350132:435470243547024355634933Azorhizobium caulinodans ORS 571, complete genometransposase9e-0752.4
NC_015514:477935:4917984917984928051008Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit3e-1167.4
NC_015514:181773:195606195606196601996Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit2e-1167.4
NC_015514:181773:188131188131189048918Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit3e-1167.4
NC_014151:856354:8627978627978638041008Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region2e-22104
NC_014151:3611956:3645262364526236463171056Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region9e-22102
NC_014151:3611956:3631363363136336323701008Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region6e-22102
NC_015671:1865752:1872483187248318734901008Cellvibrio gilvus ATCC 13127 chromosome, complete genomeintegrase catalytic subunit3e-22103
NC_015671:3470903:3484356348435634853631008Cellvibrio gilvus ATCC 13127 chromosome, complete genomeintegrase catalytic subunit3e-22103
NC_010407:3132683:315392831539283154890963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase3e-1373.6
NC_010407:151599:164242164242165204963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-1271.2
NC_010407:3174470:318889031888903189852963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-1270.9
NC_010407:3174470:317934031793403180302963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-1271.2
NC_010407:2038499:204530220453022046264963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-1270.9
NC_010407:410918:425858425858426820963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-1271.2
NC_010407:32960:427454274543707963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-1271.2
NC_010399:13222:228812288123843963Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, completeputative transposase2e-1271.2
NC_010399:13222:182471824719209963Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, completeputative integrase2e-1270.9
NC_010617:1467000:1477774147777414787811008Kocuria rhizophila DC2201, complete genomeputative transposase1e-1788.2
NC_010617:774914:7984987984987995081011Kocuria rhizophila DC2201, complete genomeputative transposase2e-1477.8
NC_010617:774914:7895457895457905551011Kocuria rhizophila DC2201, complete genomeputative transposase2e-1477.8
NC_012803:1552122:1558163155816315591701008Micrococcus luteus NCTC 2665, complete genometransposase4e-1476.6
NC_012803:1980955:199243219924321993382951Micrococcus luteus NCTC 2665, complete genomehypothetical protein3e-0650.4
NC_014391:4644500:465256046525604653531972Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeIntegrase catalytic region1e-1272
NC_017955:3731480:3775304377530437763441041Modestobacter marinus, complete genomehypothetical protein4e-0857
NC_016947:70210:917919179192300510Mycobacterium intracellulare MOTT-02 chromosome, complete genomeputative transposase3e-1270.9
NC_013235:4091185:409404340940434095035993Nakamurella multipartita DSM 44233, complete genomeIntegrase catalytic region1e-1478.6
NC_006361:3047788:3070716307071630717621047Nocardia farcinica IFM 10152, complete genomeputative transposase2e-24110
NC_006361:2225072:2244167224416722451981032Nocardia farcinica IFM 10152, complete genomeputative transposase2e-1890.9
NC_021064:816000:8267108267108277201011Propionibacterium avidum 44067, complete genomeintegrase catalytic subunit4e-2096.7
NC_019673:6394319:643232664323266433324999Saccharothrix espanaensis DSM 44229 complete genomeTransposase6e-0649.3
NC_003888:56225:773157731578271957Streptomyces coelicolor A3(2), complete genomeIS1652 transposase2e-0754.7
NC_003888:5114147:5122836512283651238551020Streptomyces coelicolor A3(2), complete genomeIS1652 transposase2e-0754.7
NC_003888:8613848:862323086232308624186957Streptomyces coelicolor A3(2), complete genomeinsertion element transposase2e-0754.3
NC_003888:6103534:613988761398876140843957Streptomyces coelicolor A3(2), complete genometransposase2e-0754.7
NC_015957:196000:199676199676200110435Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-0650.4