Pre_GI: BLASTP Hits

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Query: NC_016582:4983222:4994103 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4994103, End: 4996247, Length: 2145

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:6103534:6128360612836061310202661Streptomyces coelicolor A3(2), complete genomeATP /GTP-binding protein6e-24113
NC_003888:5042283:5055828505582850587282901Streptomyces coelicolor A3(2), complete genomeATP/GTP binding protein7e-1789.7
NC_016582:5769080:5782633578263357847442112Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP/GTP-binding protein8e-180630
NC_016582:4983222:4983222498322249870823861Streptomyces bingchenggensis BCW-1 chromosome, complete genomeATP/GTP-binding protein9e-1065.9
NC_006363:36959:4500745007476552649Nocardia farcinica IFM 10152 plasmid pNF2, complete sequencehypothetical protein7e-33142
NC_014666:3629696:3637375363737536396542280Frankia sp. EuI1c chromosome, complete genomehypothetical protein3e-22107
NC_014666:1601972:1620253162025316265196267Frankia sp. EuI1c chromosome, complete genomehypothetical protein6e-1893.2
NC_017186:5586328:5599527559952756009391413Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein1e-1172.4
NC_014033:395000:4039554039554072753321Prevotella ruminicola 23 chromosome, complete genomehypothetical protein4e-0963.9
NC_006361:1547034:1557575155757515603552781Nocardia farcinica IFM 10152, complete genomehypothetical protein5e-0757
NC_016582:10326938:103454851034548510346480996Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein8e-0756.2
NC_013929:3660321:3669043366904336716582616Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein9e-24112
NC_013595:3541012:3559577355957735619822406Streptosporangium roseum DSM 43021, complete genomehypothetical protein7e-2099.8
NC_017186:5586328:5601422560142256038362415Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein6e-1996.7
NC_019673:3041936:3051529305152930527791251Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein8e-0962.8
NC_010572:33724:4832848328503041977Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-31137
NC_007333:430000:4499244499244544954572Thermobifida fusca YX, complete genomehypothetical protein2e-1274.7
NC_005125:2366778:2384287238428723873163030Gloeobacter violaceus PCC 7421, complete genomehypothetical protein5e-0963.5
NC_003272:4621554:4636981463698146391132133Nostoc sp. PCC 7120, complete genomehypothetical protein2e-0758.2
NC_010572:8493946:8495626849562684976021977Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-31137
NC_014318:5586287:5601209560120956037942586Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein4e-1997.1
NC_013510:1849751:1855024185502418591754152Thermomonospora curvata DSM 43183, complete genomehypothetical protein7e-1893.2
NC_014318:5586287:5599486559948656006461161Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein1e-0758.9
NC_013947:460398:4685274685274715803054Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein2e-0654.7
NC_008278:3601959:3614846361484636180523207Frankia alni ACN14a, complete genomehypothetical protein; putative P-loop containing nucleotide triphosphate hydrolases and TIR domains9e-1479.3
NC_013510:1849751:1862641186264118651722532Thermomonospora curvata DSM 43183, complete genomeNB-ARC domain protein1e-1999
NC_014666:7838500:7846062784606278490703009Frankia sp. EuI1c chromosome, complete genomeNB-ARC domain protein4e-31136
NC_013161:1801904:1803292180329218053102019Cyanothece sp. PCC 8802, complete genomeNB-ARC domain protein8e-0756.2
NC_013757:3651646:3667190366719036695712382Geodermatophilus obscurus DSM 43160, complete genomeNB-ARC domain protein6e-0756.6
NC_014318:8687448:8690850869085086945303681Amycolatopsis mediterranei U32 chromosome, complete genomeNB-ARC domain-containing protein9e-1892.8
NC_017186:8683964:8690906869090686945863681Amycolatopsis mediterranei S699 chromosome, complete genomeNB-ARC domain-containing protein9e-1892.8
NC_018531:1900619:1912565191256519151142550Arthrobacter sp. Rue61a chromosome, complete genomenephrocystin8e-21102
NC_008312:5386630:5391012539101253949983987Trichodesmium erythraeum IMS101, complete genomepeptidase-like2e-1068.6
NC_013757:1438812:1458928145892814615072580Geodermatophilus obscurus DSM 43160, complete genomeputative ATP/GTP binding protein9e-26119
NC_009921:5681677:5687555568755556895822028Frankia sp. EAN1pec, complete genomeputative ATP/GTP binding protein8e-1686.3
NC_007777:1018824:1018824101882410216282805Frankia sp. CcI3, complete genomeputative ATP/GTP binding protein5e-1996.7
NC_013757:1212308:1230217123021712331952979Geodermatophilus obscurus DSM 43160, complete genomeputative ATP/GTP binding protein2e-1687.8
NC_008278:514600:5337995337995363272529Frankia alni ACN14a, complete genomeputative ATP/GTP binding protein2e-1378.6
NC_014666:1805806:1827973182797318308462874Frankia sp. EuI1c chromosome, complete genomesigma-70 region 2 domain protein5e-1273.6
NC_014391:6749156:6766968676696867694152448Micromonospora aurantiaca ATCC 27029 chromosome, complete genometetratricopeptide domain-containing protein2e-24115
NC_011726:1827000:1827925182792518302282304Cyanothece sp. PCC 8801, complete genomeTetratricopeptide TPR_2 repeat protein7e-0756.6
NC_013131:7889127:7901223790122379056294407Catenulispora acidiphila DSM 44928, complete genomeTetratricopeptide TPR_45e-0963.5
NC_019757:3492500:3506963350696335091942232Cylindrospermum stagnale PCC 7417, complete genomeTfp pilus assembly protein PilF6e-1066.6
NC_009921:6421387:6433394643339464345511158Frankia sp. EAN1pec, complete genomeTIR protein3e-0757.4
NC_009974:53865:5386553865567262862Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02, completeTPR repeat-containing protein6e-0860.1
NC_009973:178000:2139952139952173123318Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeTPR repeat-containing protein7e-1789.7
NC_013757:900500:9101879101879131893003Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, SARP family4e-20100