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Query: NC_016582:3763476:3772447 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 3772447, End: 3772656, Length: 210

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006361:498305:507996507996508202207Nocardia farcinica IFM 10152, complete genomehypothetical protein3e-1063.9
NC_016887:4403872:441580044158004416006207Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein3e-0960.8
NC_007777:461500:470346470346470555210Frankia sp. CcI3, complete genomeprotein of unknown function DUF3974e-0856.6
NC_008278:6885254:690709169070916907285195Frankia alni ACN14a, complete genomePutative regulator5e-0856.6
NC_021177:2309615:232333723233372323546210Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein5e-0856.6
NC_016582:4983222:499046449904644990679216Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-0856.2
NC_013595:8553904:856210985621098562315207Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-0754.7
NC_021177:2309615:232169023216902321899210Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein2e-0754.3
NC_016113:1143580:115295911529591153168210Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencehypothetical protein2e-0754.3
NC_016582:7699420:771727277172727717478207Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein3e-0753.9
NC_016887:5988878:599565059956505995853204Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein4e-0753.5
NC_021177:2309615:232298223229822323224243Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein4e-0753.5
NC_016582:9664000:967362796736279673845219Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-0753.1
NC_013159:1225866:124197612419761242173198Saccharomonospora viridis DSM 43017, complete genomeprotein of unknown function (DUF397)5e-0753.1
NC_015434:4640769:464675846467584646955198Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein5e-0753.1
NC_016111:3577572:358421535842153584427213Streptomyces cattleya NRRL 8057, complete genomehypothetical protein9e-0752.4
NC_016582:9551123:955695495569549557145192Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein1e-0651.6
NC_016582:5769080:577484257748425775060219Streptomyces bingchenggensis BCW-1 chromosome, complete genomeregulatory protein2e-0651.2
NC_016113:1143580:115333311533331153542210Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencehypothetical protein2e-0651.2
NC_013159:1225866:123993612399361240133198Saccharomonospora viridis DSM 43017, complete genomeprotein of unknown function (DUF397)9e-0648.9