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Query: NC_016582:2009588:2010547 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 2010547, End: 2011629, Length: 1083

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:3159234:3182091318209131831881098Streptomyces sp. SirexAA-E chromosome, complete genomeArsR family transcriptional regulator5e-22105
NC_017191:3841170:386595838659583866245288Bacillus amyloliquefaciens XH7 chromosome, complete genomeArsR family transcriptional regulator1e-0758.2
NC_017188:3839478:386426638642663864553288Bacillus amyloliquefaciens TA208 chromosome, complete genometranscriptional repressor sdpR1e-0757.8
NC_019842:3852062:387916538791653879452288Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,transcriptional repressor sdpR2e-0757.4
NC_020410:3801583:382773038277303828017288Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetranscriptional regulator (ArsR family)2e-0757.4
NC_013947:5682895:570717957071795707568390Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TrmB3e-0756.6
NC_018681:867230:897050897050897496447Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein1e-0654.7
NC_012032:4385311:438939943893994389698300Chloroflexus sp. Y-400-fl, complete genometranscriptional regulator, ArsR family2e-0653.5
NC_010175:4375265:437934743793474379652306Chloroflexus aurantiacus J-10-fl, complete genomeregulatory protein ArsR2e-0653.5
NC_013947:5546315:556240055624005562693294Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, ArsR family2e-0653.5
NC_016948:678939:682177682177682524348Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein4e-0652.8
NC_013526:1034035:105582410558241056126303Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, ArsR family5e-0652.4
NC_007907:4714844:472984247298424730195354Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-0652