Pre_GI: BLASTP Hits

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Query: NC_016582:1707756:1729883 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1729883, End: 1731301, Length: 1419

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014328:2426921:2430181243018124320701890Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative cell wall-binding protein3e-1686.7
NC_014328:2426921:2436213243621324391222910Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative cell wall-binding protein2e-1584.3
NC_014328:2426921:2439223243922324422493027Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative surface/cell-adhesion protein4e-1273.2
NC_004557:806878:8130058130058150082004Clostridium tetani E88, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1067.8
NC_004557:806878:8164028164028174691068Clostridium tetani E88, complete genomeputative surface/cell-adhesion protein3e-1067
NC_016935:2567039:2582935258293525875124578Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein6e-1065.9
NC_018515:595500:6087396087396120533315Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeWD40-like repeat protein6e-0652.8