Pre_GI: BLASTP Hits

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Query: NC_016582:1707756:1728903 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1728903, End: 1729832, Length: 930

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007722:2172000:218622421862242187153930Erythrobacter litoralis HTCC2594, complete genomeprobable periplasmic substrate-binding protein5e-54211
NC_013922:1855000:186017718601771861070894Natrialba magadii ATCC 43099 chromosome, complete genomeperiplasmic binding protein2e-43176
NC_012491:4987280:501000350100035010773771Brevibacillus brevis NBRC 100599, complete genomeprobable ABC transporter substrate binding protein3e-1479.3
NC_014831:1557485:1558876155887615599131038Thermaerobacter marianensis DSM 12885 chromosome, complete genomeperiplasmic binding protein2e-1377
NC_001263:1378605:137784513778451378606762Deinococcus radiodurans R1 chromosome 1, complete sequencemetal binding protein, putative4e-1272.4
NC_015757:2343193:234677323467732347693921Sulfobacillus acidophilus TPY chromosome, complete genomeperiplasmic binding protein6e-1271.6
NC_015422:1163752:118794311879431188842900Alicycliphilus denitrificans K601 chromosome, complete genomeABC transporter periplasmic subunit6e-1271.6
NC_016884:3219030:322258932225893223530942Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeABC transporter periplasmic protein7e-1271.6
NC_010505:5583000:559090955909095591733825Methylobacterium radiotolerans JCM 2831, complete genomeperiplasmic binding protein4e-1168.9
NC_010511:5169338:518820251882025188996795Methylobacterium sp. 4-46 chromosome, complete genomeperiplasmic binding protein9e-1167.8
NC_014483:1376500:1383180138318013841871008Paenibacillus polymyxa E681 chromosome, complete genomeABC-type Fe3+-hydroxamate transport system, periplasmic component3e-1065.9
NC_011992:1038985:105606410560641056954891Acidovorax ebreus TPSY, complete genomeperiplasmic binding protein4e-1065.5
NC_008782:1136732:115380511538051154695891Acidovorax sp. JS42, complete genomeperiplasmic binding protein6e-1065.1
NC_016641:3173250:3180233318023331812371005Paenibacillus terrae HPL-003 chromosome, complete genomeFe3+-hydroxamate ABC transporter periplasmic protein6e-0962
NC_014622:1514416:1520936152093615219431008Paenibacillus polymyxa SC2 chromosome, complete genomeABC transporter substrate-binding protein6e-0961.6
NC_010505:1205747:120574712057471206523777Methylobacterium radiotolerans JCM 2831, complete genomeperiplasmic binding protein7e-0961.6
NC_007951:1042291:106546310654631066374912Burkholderia xenovorans LB400 chromosome 1, complete sequenceABC Fe3+-hydroxamate/cobalamin transporter, periplasmic ligand binding protein1e-0757.8
NC_000917:1246806:124587512458751246809935Archaeoglobus fulgidus DSM 4304, complete genomespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (potD)1e-0654.3