Pre_GI: BLASTP Hits

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Query: NC_016582:1707756:1725994 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1725994, End: 1726467, Length: 474

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:4363250:437218543721854373006822Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3''-kinase4e-0960.5
NC_017162:270460:281771281771282754984Acinetobacter baumannii 1656-2 chromosome, complete genomeStrA5e-0650.1
NC_012668:3037345:304735230473523047546195Vibrio cholerae MJ-1236 chromosome 1, complete sequenceStrA aminoglycoside phosphotransferase7e-0649.7
NC_010545:1781393:179421317942131795016804Corynebacterium urealyticum DSM 7109, complete genomeaminoglycoside-3''-phosphotransferase9e-0649.3
NC_012668:3037345:304332230433223044125804Vibrio cholerae MJ-1236 chromosome 1, complete sequenceaminoglycoside 3'-phosphotransferase9e-0649.3
NC_013365:92973:108704108704109507804Escherichia coli O111:H- str. 11128 plasmid pO111_1, completestreptomycin phosphotransferase9e-0649.3
NC_016445:89500:101153101153101956804Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeaminoglycoside resistance protein A9e-0649.3
NC_017162:270460:288687288687289532846Acinetobacter baumannii 1656-2 chromosome, complete genomeStrA9e-0649.3
NC_017171:280762:291080291080291925846Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomehypothetical protein9e-0649.3
NC_017387:247462:293103293103293948846Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomestreptomycin 3''-kinase9e-0649.3
NC_003384:157158:166864166864167667804Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidstreptomycin phosphotransferase9e-0649.3