Pre_GI: BLASTP Hits

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Query: NC_016582:1707756:1725077 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1725077, End: 1725757, Length: 681

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009142:515828:532918532918533646729Saccharopolyspora erythraea NRRL 2338, complete genomehydrolase1e-35149
NC_010572:3314500:333580733358073336532726Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative trypsin-like protease1e-34146
NC_021177:4945878:495329749532974954022726Streptomyces fulvissimus DSM 40593, complete genomeTrypsin-like serine protease, typically periplasmic, containing C-terminal PDZ domain6e-34144
NC_015953:4385419:439788043978804398602723Streptomyces sp. SirexAA-E chromosome, complete genomepeptidase S1 and S6 chymotrypsin/Hap7e-34143
NC_019673:8348604:837151283715128372255744Saccharothrix espanaensis DSM 44229 complete genomePeptidase, S1/S6 family8e-29127
NC_009953:3426344:3446002344600234471801179Salinispora arenicola CNS-205 chromosome, complete genomepeptidase M7 snapalysin4e-1374.7
NC_013947:6221877:623479962347996235593795Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptidase S1 and S6 chymotrypsin/Hap1e-1273.6
NC_015683:2176156:218699721869972187827831Corynebacterium ulcerans BR-AD22 chromosome, complete genometrypsin-like serine protease2e-1169.7
NC_009142:2692693:269269326926932693472780Saccharopolyspora erythraea NRRL 2338, complete genomesecreted trypsin-like serine protease1e-0860.5
NC_018750:1835500:184807318480731848855783Streptomyces venezuelae ATCC 10712, complete genomeTrypsin protease precursor9e-0857
NC_013947:613774:632994632994633827834Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptidase S1 and S6 chymotrypsin/Hap2e-0652.8
NC_017186:2252438:227459222745922275401810Amycolatopsis mediterranei S699 chromosome, complete genometrypsin-like serine protease5e-0651.6
NC_014318:2252417:227457122745712275380810Amycolatopsis mediterranei U32 chromosome, complete genomesecreted trypsin-like serine protease5e-0651.6