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Query: NC_016582:1707756:1714571 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1714571, End: 1715068, Length: 498

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018750:3249756:327028732702873270781495Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-44178
NC_007777:4016000:403418340341834034671489Frankia sp. CcI3, complete genomeYbaK/prolyl-tRNA synthetase-like protein8e-37152
NC_014562:2049921:205272620527262053202477Pantoea vagans C9-1 chromosome, complete genomeUncharacterized protein yeaK1e-2099
NC_013971:2297777:230159423015942302070477Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein7e-2096.3
NC_013961:2260250:226406722640672264543477Erwinia amylovora, complete genomeProlyl-tRNA synthetase7e-2096.3
NC_020211:379000:396027396027396533507Serratia marcescens WW4, complete genomehypothetical protein1e-1995.5
NC_016822:1431200:143120014312001431703504Shigella sonnei 53G, complete genomeYbaK/prolyl-tRNA synthetase associated domain-containing protein6e-1993.6
NC_014121:2514544:253119825311982531698501Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeYbaK/prolyl-tRNA synthetase-associated domain protein9e-1992.8
NC_014837:2803447:280561728056172806093477Pantoea sp. At-9b chromosome, complete genomeYbaK/prolyl-tRNA synthetase associated region2e-1891.7
NC_010694:1502019:152573015257301526224495Erwinia tasmaniensis, complete genomehypothetical protein7e-1889.7
NC_007511:1681764:168566216856621686165504Burkholderia sp. 383 chromosome 2, complete sequenceconserved hypothetical protein, YbaK/prolyl-tRNA synthetase associated region2e-1788.6
NC_016816:1676460:170578417057841706260477Pantoea ananatis LMG 5342, complete genomeYbaK/prolyl-tRNA synthetase associated domain-containing protein6e-1683.2
NC_013956:2749685:275281527528152753291477Pantoea ananatis LMG 20103 chromosome, complete genomeYeaK6e-1683.2