Pre_GI: BLASTP Hits

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Query: NC_016582:1707756:1711095 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1711095, End: 1711499, Length: 405

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:11734963:117376771173767711738477801Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-1992.8
NC_010572:8493946:851584385158438516592750Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase2e-1064.3
NC_010572:1:293382933830087750Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase2e-1064.3
NC_009921:4035225:404625040462504047026777Frankia sp. EAN1pec, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0959.7
NC_013595:4031947:404173740417374042519783Streptosporangium roseum DSM 43021, complete genometransposase, IS4 family7e-0752.8
NC_014391:1910273:193694619369461937728783Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein6e-0752.8
NC_014815:1490957:150301915030191503801783Micromonospora sp. L5 chromosome, complete genometransposase is4 family protein6e-0752.8
NC_014391:1910273:195317719531771953959783Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein6e-0752.8
NC_014815:658893:667696667696668478783Micromonospora sp. L5 chromosome, complete genometransposase is4 family protein6e-0752.8
NC_009953:3509229:352889135288913529673783Salinispora arenicola CNS-205 chromosome, complete genometransposase IS4 family protein1e-0652
NC_014391:1910273:192410119241011924883783Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein4e-0650.1
NC_007777:135222:148289148289149023735Frankia sp. CcI3, complete genomeresponse regulator receiver protein6e-0649.7
NC_015953:1983821:198971319897131990063351Streptomyces sp. SirexAA-E chromosome, complete genome6e-0649.7
NC_003888:5790104:579673657967365797479744Streptomyces coelicolor A3(2), complete genometransposase6e-0649.7
NC_013093:626473:641901641901642743843Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein9e-0648.9
NC_013093:3791912:380187738018773802719843Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein9e-0648.9