Pre_GI: BLASTP Hits

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Query: NC_016582:1707756:1709857 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1709857, End: 1710405, Length: 549

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016109:3591401:361489536148953615482588Kitasatospora setae KM-6054, complete genomeputative TetR family transcriptional regulator1e-1686.3
NC_003155:5957657:595831059583105958879570Streptomyces avermitilis MA-4680, complete genomeTetR-family transcriptional regulator3e-1478.2
NC_003888:5042283:506440550644055064998594Streptomyces coelicolor A3(2), complete genometetR-family transcriptional regulator2e-1271.6
NC_015682:205900:213249213249213854606Thermodesulfobacterium sp. OPB45 chromosome, complete genomeTetR family transcriptional regulator2e-0858.5
NC_011740:1189455:119515711951571195795639Escherichia fergusonii ATCC 35469, complete genomeDNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway2e-0755.5
NC_007510:1959883:197404719740471974766720Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-0755.1
NC_012704:652589:6543696543696554061038Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family4e-0754.3
NC_011663:1627220:163153716315371632163627Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator6e-0753.9
NC_007384:1086025:111171911117191112357639Shigella sonnei Ss046, complete genomeputative tet operon regulator6e-0753.9
NC_014831:2201246:221887322188732219736864Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, TetR family9e-0753.1
NC_009436:1679265:169231516923151692953639Enterobacter sp. 638, complete genomeTetR family transcriptional regulator1e-0653.1
NC_016111:2257166:227095022709502271552603Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator1e-0652.8
NC_017030:3771675:379248737924873793119633Corallococcus coralloides DSM 2259 chromosome, complete genomeTetR family transcriptional regulator3e-0651.6
NC_008577:1489643:151097015109701511590621Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, TetR family3e-0651.6
NC_006177:2398482:242190624219062422553648Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator3e-0651.2