Pre_GI: BLASTP Hits

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Query: NC_016582:1639375:1659623 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1659623, End: 1659787, Length: 165

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:11878078:119023021190230211902730429Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transposase IS46e-1579.3
NC_016109:2473126:248257624825762482884309Kitasatospora setae KM-6054, complete genomeputative transposase8e-1475.5
NC_016109:2065326:207929020792902079598309Kitasatospora setae KM-6054, complete genomeputative transposase8e-1475.5
NC_003903:260796:266719266719266880162Streptomyces coelicolor A3(2) plasmid SCP1, complete sequencehypothetical protein3e-1373.9
NC_010572:8493946:851818385181838518650468Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase9e-1062.4
NC_010572:1:272802728027747468Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase9e-1062.4
NC_015957:5225903:523182052318205232287468Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0960.8
NC_016111:6222461:623352962335296234098570Streptomyces cattleya NRRL 8057, complete genometransposase1e-0858.5
NC_018750:6070260:607913960791396079993855Streptomyces venezuelae ATCC 10712, complete genometransposase3e-0857.4
NC_007951:1042291:105402510540251054654630Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase1e-0755.5
NC_009142:2725000:273128127312812731655375Saccharopolyspora erythraea NRRL 2338, complete genometransposase, IS42e-0650.8
NC_009142:5459819:547686854768685477242375Saccharopolyspora erythraea NRRL 2338, complete genometransposase, IS42e-0650.8
NC_009142:2480608:250942125094212509795375Saccharopolyspora erythraea NRRL 2338, complete genometransposase, IS43e-0650.8
NC_012987:32296:327573275733101345Methylobacterium extorquens DM4 plasmid p1METDI, complete sequence4e-0650.1
NC_018750:7540450:755765475576547557764111Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein6e-0649.7