Pre_GI: BLASTP Hits

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Query: NC_016582:11878078:11894321 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11894321, End: 11894485, Length: 165

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:11878078:118930241189302411893827804Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegrase catalytic region2e-0858.2
NC_016582:1639375:166690516669051667873969Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegrase catalytic region4e-0857
NC_015957:7348269:738583073858307386612783Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-0753.9
NC_019673:2051363:2115166211516621161851020Saccharothrix espanaensis DSM 44229 complete genomeIntegrase, catalytic subunit1e-0652
NC_016582:11535695:115444651154446511544953489Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegrase catalytic region3e-0650.8
NC_015957:7408466:7445734744573474468641131Streptomyces violaceusniger Tu 4113 chromosome, complete genomeintegrase catalytic subunit5e-0650.1
NC_016582:1751988:176704117670411767985945Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegrase catalytic region6e-0649.7
NC_016582:1707756:171886917188691719864996Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegrase catalytic region7e-0649.3