Pre_GI: BLASTP Hits

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Query: NC_016582:11820671:11840011 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11840011, End: 11841537, Length: 1527

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004663:107019:1203681203681236613294Bacteroides thetaiotaomicron VPI-5482, complete genomeputative transmembrane protein7e-120431
NC_015690:3941113:3985162398516239866221461Paenibacillus mucilaginosus KNP414 chromosome, complete genomeParallel beta-helix repeat-containing protein5e-90332
NC_016935:1365463:1404614140461414060711458Paenibacillus mucilaginosus 3016 chromosome, complete genomeParallel beta-helix repeat-containing protein6e-90332
NC_015177:981552:99952099952010010791560Pedobacter saltans DSM 12145 chromosome, complete genomeglycoside hydrolase family 281e-1481.6
NC_015177:981552:9979839979839995091527Pedobacter saltans DSM 12145 chromosome, complete genomeglycoside hydrolase family 283e-1480.5
NC_010162:8873051:8892017889201788938251809Sorangium cellulosum 'So ce 56', complete genomehypothetical protein4e-1273.6
NC_013131:7945280:7945280794528079469111632Catenulispora acidiphila DSM 44928, complete genomehypothetical protein5e-1169.7
NC_015177:981552:1001086100108610025671482Pedobacter saltans DSM 12145 chromosome, complete genomeglycoside hydrolase family 285e-0859.7
NC_013061:1856969:1866755186675518682331479Pedobacter heparinus DSM 2366, complete genomeglycoside hydrolase family 283e-0757
NC_014041:1084246:1099355109935511007671413Zunongwangia profunda SM-A87 chromosome, complete genomeglycoside hydrolase family protein7e-0755.8
NC_015164:2777008:2782004278200427834191416Bacteroides salanitronis DSM 18170 chromosome, complete genomeglycoside hydrolase family 282e-0654.7
NC_013061:1856969:1868983186898318704521470Pedobacter heparinus DSM 2366, complete genomeglycoside hydrolase family 283e-0653.9