Pre_GI: BLASTP Hits

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Query: NC_016582:11734963:11744790 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11744790, End: 11745230, Length: 441

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:622993:627541627541628107567Streptomyces avermitilis MA-4680, complete genomehypothetical protein8e-78288
NC_007948:1695500:170165417016541702130477Polaromonas sp. JS666, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase1e-46184
NC_013406:2866000:289920028992002899652453Paenibacillus sp. Y412MC10 chromosome, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase5e-43172
NC_013510:2288746:228931822893182289743426Thermomonospora curvata DSM 43183, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase5e-43172
NC_016935:1365463:139513613951361395585450Paenibacillus mucilaginosus 3016 chromosome, complete genomemethylmalonyl-CoA epimerase2e-42171
NC_015690:1348691:137071013707101371159450Paenibacillus mucilaginosus KNP414 chromosome, complete genomemethylmalonyl-CoA epimerase2e-42171
NC_016935:1868839:189440218944021894851450Paenibacillus mucilaginosus 3016 chromosome, complete genomemethylmalonyl-CoA epimerase2e-42171
NC_003037:1245645:126717712671771267737561Sinorhizobium meliloti 1021 plasmid pSymA, complete sequencehypothetical protein2e-41167
NC_012914:5194791:521734252173425217794453Paenibacillus sp. JDR-2, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase2e-41167
NC_013061:2775623:278313327831332783585453Pedobacter heparinus DSM 2366, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase4e-39159
NC_004193:950000:967291967291967743453Oceanobacillus iheyensis HTE831, complete genomehypothetical protein4e-39159
NC_008541:472643:477345477345477782438Arthrobacter sp. FB24 chromosome 1, complete sequenceGlyoxalase/bleomycin resistance protein/dioxygenase1e-30131
NC_015859:3346473:334647333464733347261789Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein5e-28123
NC_013757:1438812:144722014472201447660441Geodermatophilus obscurus DSM 43160, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase2e-27120
NC_003888:211748:231022231022231465444Streptomyces coelicolor A3(2), complete genomehypothetical protein9e-24108
NC_011884:2921618:293153329315332931967435Cyanothece sp. PCC 7425, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase9e-1165.5
NC_015377:86847:102103102103102558456Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceputative glyoxalase/bleomycin resistance protein/dioxygenase2e-1064.3
NC_014168:1724993:172765117276511728112462Segniliparus rotundus DSM 44985 chromosome, complete genomeglyoxalase/bleomycin resistance protein/dioxygenase2e-0754.3
NC_007626:2204767:226227822622782262739462Magnetospirillum magneticum AMB-1, complete genomeLactoylglutathione lyase and related lyase4e-0753.5