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Query: NC_016582:11672500:11682256 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11682256, End: 11683050, Length: 795

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009380:725870:7336717336717358662196Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein2e-50199
NC_017190:591139:6045276045276068122286Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein9e-43173
NC_014551:605855:6190086190086212932286Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein9e-43173
NC_016114:1435436:1442790144279014450122223Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein1e-42172
NC_019896:2579036:2588470258847025907522283Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein2e-41169
NC_000964:1474451:1478441147844114807232283Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-41169
NC_020272:3325000:3333612333361233358972286Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein6e-41167
NC_015434:1671532:1678676167867616810602385Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein8e-36150
NC_014215:349917:3563413563413584912151Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,peptidoglycan binding domain protein6e-32137
NC_016047:345491:3472683472683494482181Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein3e-28125
NC_014639:3850000:3867122386712238692992178Bacillus atrophaeus 1942 chromosome, complete genomeYbfG protein1e-26120
CP002207:3850000:3867122386712238692992178Bacillus atrophaeus 1942, complete genomeYbfG1e-26120
NC_015957:2781740:2791615279161527939842370Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein2e-26119
NC_021064:816000:8243628243628267612400Propionibacterium avidum 44067, complete genomehypothetical protein1e-23110
NC_015067:32500:4513445134475302397Bifidobacterium longum subsp. longum JCM 1217, complete genomehypothetical protein8e-23107
NC_008618:10915:2435724357267532397Bifidobacterium adolescentis ATCC 15703, complete genomehypothetical protein8e-23107
NC_014727:95875:1054041054041072841881Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,peptidoglycan binding domain protein1e-20100
NC_013198:36829:4684946849485191671Lactobacillus rhamnosus GG, complete genomepredicted ORF6e-1787.8
NC_008054:1815723:184036218403621841330969Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completehypothetical protein2e-1169.7